Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g143 ATGGGGAGCTTTGTGGTGCAGTTCCCCAGCAAATTGAGGAACTTCACAGTTTGGGCTTCACCCAACAATGGGGTCCCATTTGATTCTCCGCAGTCCAGAGGGCCAGTGATTTTGGAACTCCCACTCGATAAGATTCGGAGACCACTGCTGCGTACCAGATCCAATGATCCAGAAAAAGTGAAGGAACTCATGGAAAGTATCAGAGAAATTGGCCTCCAAGTACCGATTGATGTGCTTGAGGTTGATGGAGCTTACTATGGTTTTTCCGGTTGTCATCGGTACGAAGCACACCAGCGCCTAGGGCTCCCAACAATTCGTTGCAAAGTTCGACGAGGAACGAAAGAAACATTGAGGCATCACCTCCGCTGA 369 49.32 MGSFVVQFPSKLRNFTVWASPNNGVPFDSPQSRGPVILELPLDKIRRPLLRTRSNDPEKVKELMESIREIGLQVPIDVLEVDGAYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLRHHLR* 123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1425249 1426536 + Vvi1g143 Vvi1g143 769343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g143 122 Pfam ParB/Sulfiredoxin domain 39 115 IPR003115 -
Vvi1g143 122 Gene3D - 35 122 - -
Vvi1g143 122 SUPERFAMILY ParB/Sulfiredoxin 18 121 IPR036086 -
Vvi1g143 122 CDD Srx 37 121 - -
Vvi1g143 122 SMART ParB_7 38 117 IPR003115 -
Vvi1g143 122 PANTHER UNCHARACTERIZED 2 122 IPR016692 GO:0032542
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g143 K12260 SRX1; sulfiredoxin [EC:1.8.98.2] - vvi:100245605 253.062
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g143 . . . . . . . . . Cmo18g00540 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00950 . Cec01g0975 Cco01g1022 Clacu01g0981 Cmu01g0934 Cre01g0863 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007624 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 36