Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g144 ATGGCAAAATCAAGGCAGCATTTTGCTAACCAGGATGCATCATTGTCACCCACTGCTGGAAGATCAAGGGAATGGGATGGCCCATCAAGATGGTCTGAATACTTAAATTTGCAAGTGACTTCCCCGATGACAGCTAGGAGTCACAGGAATGTGAGTTCTGATGGACAGGCTCAGAGTTCAAGCGGGTCACATAAGGGTTTGAACATGCAGTATGTAGTTCAACTTACCCAAGTTGCTGAAGGCCTAATGGCTAAAATGTATAGATTGAATCAAATCTTGGACTTCCCAGACTCGGTGAATCATGTATTTTCAGAAGCATTTTGGAAGGCAGGTGTTTTCCCCAACTGTCCCAGGATTTGTGTATTGCTCTCAAAGAAGTTTCCAGAGCATCATATCAAATTGCAACTGGAACGTGTTGATAAGGTTGCTTTAGATGCACTGCATGAAAATGCTGAAGTTCATTTACAAAGCTTAGAGCCATGGGTTCAGCTGCTTCTTGACTTGATGGCATTTCGGGAACAAGCTTTGCGACTTATATTGGATCTAAGCAGCACAGTTATTACCTTGTTACCTCATCAGAACTCACTCATACTACATGCGTTCATGGATCTCTTTTGTTCCTTTGTCCGTGTTAATCTCTTTTCTGAGAAGGCAAGTCCACTTCATGCTATGCCAAGGAAAATGATGCTGCAAATGTATAACCTTTTGCATGCCATGTCAAGAAATGATAGAGATTGTGATTTTTATCATCGGTTGGTTCAATTCATAGACTCTTATGATCCACCATTGAAGGGGTTACATGAAGATTTGAATTTTGTGAGCCCCCGTATTGGAGAGGTTTTAGAGGCTGTGGGTCCTATTATTTTCCTATCCACGGATACAAGGAAGTTGAGAAATGAGGGTTTTTTAAGTCCATTTCATCCTCGATATCCAGACATTCTCACAAATTCTGCTCACCCAATGAGAGCTCAAGATTTAGCAAATGTTACTTCTTATCGGGAATGGGTACTACTTGGATATCTTGTTTGTCCAGATGAGCTACTTCGTGTCACTAGCATTGACATTGCTTTGGTGGTGCTGAAGGAAAATTTAGTTCTTACATTATTCAGGGATGAGTATGTGCTATTGCATGAGGATTATCAATTATATGTTTTGCCACGGATACTGGAATCAAAGAAAATGGCAAAATCTGGACGCACCAAGCAAAAAGAAGCTGACCTAGAGTATAGTGTCGCAAAGCAGGTTGAGAAAATGATAAGTGAAGTGCATGAGCAAGCAATACTATCTTGTGATTCCATACATCGTGAGAGGAGAATATTATTAAAGCAAGAAATTGGAAGAATGGTGCTCTTTTTTACTGATCAGCCAAGTTTATTGGCTCCAAATATTCAGATGGTATTTTCTGCCTTGGCTTTGGCTCAATGTGAAGTCTTGTGGTATTTCCAACATGTAGGAATTGCATCATCGAAATCCAAAACTGCTAGAATGGTACCAGTTGATATAGATCCAAGTGATCCAACTATCGGGTTCTTGTTGGACGGAATGGATCATCTTTGCTGTCTTGTTCGCAAGTATATAGCAGCAATTAGGGGATATGCATTATCATTTCTTTCATCTTGTGCTGGGAGAATCCGGTTTTTGTTGGGTACTCCAGGAATGGTGGCTCTTGACCTGGATGCAAACTTGAAAGGACTTTTTCAGAAGATAGTTCAGCATCTTGAAAACATACCAAAACCACAGGGTGAAAATATTTCTGCCATCACATGCAATTTATCCGAGCTGCGTAAAGATTGGTTGTCAATATTGATGATTGTCACATCTGCTCGATCATCTATAAACATAAGGCATTTGGAGAAAGCAACAGTCTCAACTGGGAAGGAAGGCTTATTATCAGAAGGAAATGCTGCATACAATTGGTCTAGATGTGTTGATGAACTGGAATCTCAGCTATCAAAGCATGGCAGTCTTAGAAAACTGTATTTCTACCATCAGCACCTTGCAGCAGTATTCAGGAACACCATGTTTGGACCGGAAGGGCGTCCTCAGCATTGCTGTGCATGGCTTGGTGTGGCTAGTAGTTTTCCAGAGTGTGCTTCTTCAATTGTTCCTGAGGAGATAACTAAAATTGGCCGAGATGCAGTTCTGTATGTAGAATCTCTCATTGAATCCATCATGGGAGGATTGGAAGGATTAATCAATATTCTTGATTCTGAAGGTGGATTTGGCTCTCTAGAGATGCAGCTTCTTCCAGAGCAGGCAGCTGTGTTCATGAATTATGCATCAAGAGTTTCAATTCCTTCATCAAAACTTCCAAGAGGAGTGGCTGGTTTTCTTTTGCCTGGTCATGAGAGCTATCCTGAAAATAATAATTCTATCAAAATGTTAGAAGCTGCAATGCAGAGGTTGACAAATTTGTGTTCAGTCTTGAATGATATGGAGCCTATATGTGTTCTGAACCATGTCTTTGTTCTGAGGGAGTATATGAGAGAATGCATCCTTGGGAACTTCAGAAGGAGACTGCTTACTGTACTAAAAACTGATAATGATCTTCAACGACCTTCTGTTCTGGAATCGCTGCTTCACAGACATATCAGCATAGTCCATCTAGCAGAGCAGCACATTAGCATGGACCTAACCCAGGGAATCAGAGAAGTTTTACTCTCGGAGGCCTTTTCAGGGCCAGTTTCTTCTCTGCATTTGTTTGAGAAACCAGCTGATCTAAATACTGGATCAGCAGCTGAAGCGGTTTGCAACTGGTACATTGAGAACATTGTGAAGGATATATCAGGTGCTGGAATCCTTTTTGCACCAGTCCACAAATGCTTCAAGAGTACGAGGCCTGTGGGTGGATACTTCGCCGAATCAGTTACTGATCTTAGAGAGTTGCAATCTTATGTTCGTATTTTTGGTGGCTATGGAGTGGACAGGCTAGACAGAATGATGAAAGAACATACAGCTGCACTTTTAAATTGCATTGACACATCATTGAGGTCAAACCGTGAGGTGCTAGAGGCAGTTGCTGCAGGCATGCATTCTGGTGATCGTACAGAGAAAGAGTCGTATTTGAGGCAGATAGTGGATATGGACACAATAATTGGGTTCTGTATTCAGGCAGGGCAAGCACTGGCCTTTGATCAACTACTGGCAGAAGCTGCTGGAGCTGTTCTTGAAGAAGGTGTGCCCTTGATATATTCATTATTATCTGGGGTTGTTAAGGATCTACCCGATGAAATACCTGAAAAGAAGGAAATAAGGAGGATGAGGGTGGTGGCAAACAGTGTTAATTTAGTTAGTGATCATGATTCTGAGTGGGTGAGAATGATTTTAGAAGAAGTTGGAGGTGCAAATGATGGTTCTTGGAGCTTGTTACCGTATTTATTTGCTGCCTTCATGACATCCAATATCTGGAGCTCTACTGCCTTCAACGTTGATACTGGTGGCTTCAACAACAATATCCATTGCTTGGCCAGGTGCATCAGTGCTGTGATTGCTGGAAGTGAGTTTGTCAGGTTGGAAAGAGAACATCATCAGAAAAGTTCTCTCTCAAATGGGCATGTTGCTGCTACTTTTGATTCTGAAATACAGAGCCGATTGTCAACTGAAGCAAGCATAAAGTCTGCAATGCAGATCTTTGTTAAATTTTCTGCAGGAATAATACTAGATTCTTGGAGTGAAACTAACAGGTCTAATCTTGTTCCAAAGCTTATCTTCCTGGACCAACTTTGCGAGATCTCGTCATACCTTCCAAGAAGCTCACTTGAACCCCATGTTCCCTATGCCATTCTGCGATCAATATATGGCCAGTACTATGCAAATTCCCCATCTGCACAGCTGGCATTACTGAGCATATCACCTCGCCACTCACCTGCCGTCTCTCTGGCACATGCATCTCCAGGGTTCCGGCAGCTCCGTGGCGACTCTACTCCTCAGTCAAGTGCTACTGATTCAGGTTATTTCAGGGGATCATCAACATATAGCCAGGAACATTCTTACGCTCCTGATAGTGGAACCATTCGGAGCAGTGACAGTAGGCATCGGAATGTTCGCCGCTCTGGTCCATTGGATTATAGCTCAAGCCGTAAAGTTAAGTATGCTGAAGGATCAACTTCTGGGAGTACCGGTCCCAGCCCACTACCTAGGTTTGCGGTATCAAGATCGGGTCCTATATCATACAAGTAA 4179 42.33 MAKSRQHFANQDASLSPTAGRSREWDGPSRWSEYLNLQVTSPMTARSHRNVSSDGQAQSSSGSHKGLNMQYVVQLTQVAEGLMAKMYRLNQILDFPDSVNHVFSEAFWKAGVFPNCPRICVLLSKKFPEHHIKLQLERVDKVALDALHENAEVHLQSLEPWVQLLLDLMAFREQALRLILDLSSTVITLLPHQNSLILHAFMDLFCSFVRVNLFSEKASPLHAMPRKMMLQMYNLLHAMSRNDRDCDFYHRLVQFIDSYDPPLKGLHEDLNFVSPRIGEVLEAVGPIIFLSTDTRKLRNEGFLSPFHPRYPDILTNSAHPMRAQDLANVTSYREWVLLGYLVCPDELLRVTSIDIALVVLKENLVLTLFRDEYVLLHEDYQLYVLPRILESKKMAKSGRTKQKEADLEYSVAKQVEKMISEVHEQAILSCDSIHRERRILLKQEIGRMVLFFTDQPSLLAPNIQMVFSALALAQCEVLWYFQHVGIASSKSKTARMVPVDIDPSDPTIGFLLDGMDHLCCLVRKYIAAIRGYALSFLSSCAGRIRFLLGTPGMVALDLDANLKGLFQKIVQHLENIPKPQGENISAITCNLSELRKDWLSILMIVTSARSSINIRHLEKATVSTGKEGLLSEGNAAYNWSRCVDELESQLSKHGSLRKLYFYHQHLAAVFRNTMFGPEGRPQHCCAWLGVASSFPECASSIVPEEITKIGRDAVLYVESLIESIMGGLEGLINILDSEGGFGSLEMQLLPEQAAVFMNYASRVSIPSSKLPRGVAGFLLPGHESYPENNNSIKMLEAAMQRLTNLCSVLNDMEPICVLNHVFVLREYMRECILGNFRRRLLTVLKTDNDLQRPSVLESLLHRHISIVHLAEQHISMDLTQGIREVLLSEAFSGPVSSLHLFEKPADLNTGSAAEAVCNWYIENIVKDISGAGILFAPVHKCFKSTRPVGGYFAESVTDLRELQSYVRIFGGYGVDRLDRMMKEHTAALLNCIDTSLRSNREVLEAVAAGMHSGDRTEKESYLRQIVDMDTIIGFCIQAGQALAFDQLLAEAAGAVLEEGVPLIYSLLSGVVKDLPDEIPEKKEIRRMRVVANSVNLVSDHDSEWVRMILEEVGGANDGSWSLLPYLFAAFMTSNIWSSTAFNVDTGGFNNNIHCLARCISAVIAGSEFVRLEREHHQKSSLSNGHVAATFDSEIQSRLSTEASIKSAMQIFVKFSAGIILDSWSETNRSNLVPKLIFLDQLCEISSYLPRSSLEPHVPYAILRSIYGQYYANSPSAQLALLSISPRHSPAVSLAHASPGFRQLRGDSTPQSSATDSGYFRGSSTYSQEHSYAPDSGTIRSSDSRHRNVRRSGPLDYSSSRKVKYAEGSTSGSTGPSPLPRFAVSRSGPISYK* 1393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1426625 1460682 - Vvi1g144 Vvi1g144 769344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g144 1392 PANTHER MEMBRANE-ASSOCIATED PROTEIN HEM 63 1277 - -
Vvi1g144 1392 PANTHER NCK-ASSOCIATED PROTEIN 1 63 1277 IPR019137 -
Vvi1g144 1392 Coils Coil 792 812 - -
Vvi1g144 1392 MobiDBLite consensus disorder prediction 1 27 - -
Vvi1g144 1392 MobiDBLite consensus disorder prediction 1303 1338 - -
Vvi1g144 1392 Pfam Nck-associated protein 1 75 1271 IPR019137 -
Vvi1g144 1392 MobiDBLite consensus disorder prediction 1362 1379 - -
Vvi1g144 1392 MobiDBLite consensus disorder prediction 1 18 - -
Vvi1g144 1392 MobiDBLite consensus disorder prediction 1300 1392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g144 K05750 NCKAP1, NAP125; NCK-associated protein 1 - vvi:100264488 2720.65
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g144 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00949 . Cec01g0974 Cco01g1021 Clacu01g0980 Cmu01g0933 Cre01g0862 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009667 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33