Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g145 ATGGCTGATACTGCAACAAATCAAGTGGGTAACTCTTATGGTGAGGCAAATGACTCTCAGGAAATTGCATTTGATTTAGGAGTATTTGTTGGGGATTTAAATTTTGAGGAGGATGTAAGCAGTGATGATATATCCCTGGAAGGATTACAAAAAGAATTAGAAGAATGTAGAAACGATGATGTAGTTGCAAACATACTGTCTAAAGGTACAAAATTAAGAGAATATACAAAGGGTGTTGAGAACAATTTACGGCAAGTCGAGTTGGACTCGATTCAGGATTATATAAAAGAAAGTGATAATTTAGTCTCTCTTCATGATCAAATCCGTGATTGCGACAGTATACTGTCACAGATGGAAACACTTCTCAGTGGATTTCAGGCTGAGATTGGTTCCATAAGTTCAGACATAAAAATTCTCCAGGAGAAGTCTATGGATATGGGTCTGAAGCTGAAGAACCGTAAGGTAGCAGAGTCAAAACTGGCAAAATTTGTTGAAGATATTATAGTTCCTCCAAGGATGGTAGACATAATTGTTGATGGAGAGGTGAATGAGGAATATATGAGAACTCTTGAGATCCTAAGTAAGAAGTTGAAGTTTGTTGAAGTGGAACCTATGGTTAAAACTTCAAAAGCTCTAAAAGATGTTCAACCCGAGCTAGAAAAACTTCGTCAAAAAGCAGTCTCAAAGGTGTTTGAGTTCATTGTTCAGAAGCTTTATGCATTGAGGAAACCTAAAACAAATATCCAGATCCTTCAACAGAGTGTTCTTCTAAAATACAAGTATGTTGTTTCCTTTCTCAAGGAACATGGCAAAGAGGTATATATTGAAGTCCGTGCGGCATACATTGATACAATGAACAAGGTTTTAAGTGCACATTTCCGTGCTTATATTCAAGCTTTAGAAAAATTGCAATTGGATATAGCGACATCCAGCGATTTGATTGGTGTTGACACCAGAAGCACCAGTCTTTTCTCAAGAGGAAGAGAACCTTTGAAGAACCGATCTGCTGTTTATGCTTTGGGGGAGAGGATAAGCATTTTAAAGGAGATTGATCAACCTGCATTGATTCCACATATTGCTGAAGCCAGCTCCACAAAGTATCCTTATGAGGTCCTCTTCAGGAGTTTGCACAAGCTGCTTATGGATACTGCTAGTTCCGAGTACCTTTTCTGTGATGATTTTTTTGGGGAAGAAAATATATTTTATGAAATTTTTGCAGGTCCATTTGCTGTCATTGATGAACACTTCAATTCAATCCTTCCAAATTGTTTTGATGCAATTGGCCTGATGCTTATGATCCGCATAATACATCAACACCAGCTTGTTATGTCTCGTCGGCGGATTCCATGCTTGGATTCATATTTGGATAAGGTCAATATTTCTCTGTGGCCACGTTTCAAGATGGTATTTGACATGCACTTGAACAGCTTGCGCAATGCCAACATGAGGGCATTGTGGGAAGATGATATTCATCCTCACTATGTCATGAGGCGTTATGCTGAGTTTACATCCTCACTTATTCACCTCAATGTTGAATATGGAGATGGGCAGCTTGAACTAAACTTGGAACGGTTGAGGATGGCTATTGATGATATGGTCATCAAGCTTGCTAAAACATTCTCAAAAACTAAACTACAGACTGTGTTTCTTATAAACAACTATGATATGACAATTGCCATTTTGAAGGAAGCTGGTCCAGAAGGTGGGAAAATTCAACTGCACTTCGAGGAACTTCTGAAGAGCAACACAGCAATATTTGTGGAGGAACTACTACTAGAGCATTTCGGTGACCTAATCAAGTTTGTAAAGACCAGGGCCTCCGAGGACCCGAGTTCCAGCTCCGAGAGGCCCATAACTGTGGCTGAAGTTGAACCGCTTGTGAAGGACTTTGCAAGCAGATGGAAATCTGCGATAGAGCTGATGCACAAAGATGTGATTACCTCTTTCAGCAATTTCTTGTGCGGTATGGAGATCTTGAGAGCTGCATTGACACAGCTGCTGCTTTATTATACCAGACTTTCCGATTGCATAAAAAGAATTCCCGGTGGATCGGCCCTGAACAAAGATCTCGTTTCCATATCATCGATCATGTATGAAATCAGAAAATACTCGAGAACTTTCTAA 2124 39.55 MADTATNQVGNSYGEANDSQEIAFDLGVFVGDLNFEEDVSSDDISLEGLQKELEECRNDDVVANILSKGTKLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDSILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIVPPRMVDIIVDGEVNEEYMRTLEILSKKLKFVEVEPMVKTSKALKDVQPELEKLRQKAVSKVFEFIVQKLYALRKPKTNIQILQQSVLLKYKYVVSFLKEHGKEVYIEVRAAYIDTMNKVLSAHFRAYIQALEKLQLDIATSSDLIGVDTRSTSLFSRGREPLKNRSAVYALGERISILKEIDQPALIPHIAEASSTKYPYEVLFRSLHKLLMDTASSEYLFCDDFFGEENIFYEIFAGPFAVIDEHFNSILPNCFDAIGLMLMIRIIHQHQLVMSRRRIPCLDSYLDKVNISLWPRFKMVFDMHLNSLRNANMRALWEDDIHPHYVMRRYAEFTSSLIHLNVEYGDGQLELNLERLRMAIDDMVIKLAKTFSKTKLQTVFLINNYDMTIAILKEAGPEGGKIQLHFEELLKSNTAIFVEELLLEHFGDLIKFVKTRASEDPSSSSERPITVAEVEPLVKDFASRWKSAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDCIKRIPGGSALNKDLVSISSIMYEIRKYSRTF* 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1466984 1495349 + Vvi1g145 Vvi1g145 769345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g145 707 Coils Coil 183 203 - -
Vvi1g145 707 Pfam Vps52 / Sac2 family 88 586 IPR007258 -
Vvi1g145 707 PANTHER SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52 24 704 IPR007258 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g145 K20298 - vvi:100267922 1375.53