Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g147 ATGGGTCAGAAGTCTCTCATCTACGCCTTCGTGGCTCGTGGGACTGTGATTCTGGCGGAGTACACTGAATTCAGCGGCAATTTCAATTCCATTGCCTTTCAGTGCCTTCAGAAACTCCCCGCCACCAGCAACAAGTTCACCTACAATTGCGACGCCCACACCTTCACTTACCTTCTCGATAATGGCTACACTTATTGTGTGGTTGCAGATGAATCAGTAGGAAGACAGGTTCCCATGGCTTTCCTGGAACGCATCAGAGATGACTTTGTTGCACGATATGGGGGTGAGAAGGCTGCCACAGCTCCTGCAAACAGCCTTAACAAGGATTTTAGTTCAAAATTGAAGGAACACATGCAGTACTGTGTTGATCATCCCGAGGAGATAAGCAAGCTTGCGAAGGTGAAAGATCAGGTTTCAGAAGTTAAAGGTGTTATGATGGAGAATATTGAGAAGGTTCTAGACAGAGGGGAAAAGATAGAGCTTCTGGTGGATAAGACTCATAACCTTCATGAACAGGCACAAGATTTTCGGAGTGCTGGAACCAAAATCCGGCGGAAAATGTGGCTGCAGAACATGAAGATCAAACTCATTGTGTTGGGGATTCTGGTAGCCTTGATCCTCATCATAGTCCTCTCTGTCTGCCATGGCTTCAACTGCGGGAAGTGA 666 46.85 MGQKSLIYAFVARGTVILAEYTEFSGNFNSIAFQCLQKLPATSNKFTYNCDAHTFTYLLDNGYTYCVVADESVGRQVPMAFLERIRDDFVARYGGEKAATAPANSLNKDFSSKLKEHMQYCVDHPEEISKLAKVKDQVSEVKGVMMENIEKVLDRGEKIELLVDKTHNLHEQAQDFRSAGTKIRRKMWLQNMKIKLIVLGILVALILIIVLSVCHGFNCGK* 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1500585 1504450 + Vvi1g147 Vvi1g147 769347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g147 221 PANTHER SNARE PROTEINS 1 170 - -
Vvi1g147 221 PANTHER SYNAPTOBREVIN, LONGIN-LIKE DOMAIN PROTEIN-RELATED 1 170 - -
Vvi1g147 221 SUPERFAMILY SNARE-like 6 121 IPR011012 -
Vvi1g147 221 SUPERFAMILY SNARE fusion complex 125 192 - -
Vvi1g147 221 CDD Longin 7 121 IPR010908 -
Vvi1g147 221 Gene3D Longin domain 1 127 - -
Vvi1g147 221 PRINTS Synaptobrevin signature 135 154 IPR001388 GO:0016021|GO:0016192
Vvi1g147 221 PRINTS Synaptobrevin signature 155 174 IPR001388 GO:0016021|GO:0016192
Vvi1g147 221 PRINTS Synaptobrevin signature 191 210 IPR001388 GO:0016021|GO:0016192
Vvi1g147 221 Gene3D - 128 214 - -
Vvi1g147 221 Pfam Synaptobrevin 129 215 IPR042855 -
Vvi1g147 221 SMART Longin_2 31 113 IPR010908 -
Vvi1g147 221 CDD R-SNARE 130 188 - -
Vvi1g147 221 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 130 190 IPR042855 -
Vvi1g147 221 Pfam Regulated-SNARE-like domain 34 111 IPR010908 -
Vvi1g147 221 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g147 K08511 - vvi:100259316 421.394