Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g148 ATGTCTCTTTGCTTTTCTTCAAGCCTCTCTCTTCCGCAGCCGTCTTTCTTTTCTAATCTGAACGGGGAGCAAAGGGTTTGTGGGTTATGGAGAAATCCGCGGATTTTTAGGAGTTTGCGGGTCAGAGCTGGCCCCAAGAGGATATCTTTTGACAGAGAATGTAGGGAGGGCTTACAAGCTGGGATAGATAAGCTTGCTGATGCTGTTTCTCTTACCTTAGGACCCAAAGGACGTAATGTGATTCTTTCTGAGGCCGGAACATTAAAAGTGATCAATGATGGGGTGACAATTGCTCGGGCTATAGAGCTTTCGGATGCAATTGAAAACGCAGGAGCAACGCTTATGCAAGAGGTTGCAAGTAAGACAAATGATGTGGCAGGTGATGGTACTACGACTGCTATCATTTTGGCTCGGGAAATGATCAAGTCTGGTTTGTTGGTGGTCGCTTTTGGAGCTAACCCAATTGGTTTGAAGAAAGGAATGGATAAGACTGTGAGAGAATTGGTCAAGGTTTTGAAGAAGAAAAGCTTTCCTGTAAAAGGGAGGGATGATATAAGAGCTGTGGCCTCAATTTCTGCTGGAAATGATGACTTCGTTGGGAATTTAATTGCTGAAGCTATAGATAAAATTGGCCCTGATGGAGTAATCTCCATTGAATCATCCTCATCGTCTGAAACCTCTGTTATAATTGAAGAAGGAATGAAGATCGACAAAGGTTATATGTCACCCCACTTTATCACAAACCAGGACAAATCTATTGTGGAGTTCGAGAATGCTAAAGTTCTTGTAACTGATCAAAAGATTTCAACCATCAAAGGAATAGTTCCTTTACTGGAAAAGACTACCCAACTGAGTGTCCCACTGCTAATCATTGCTGAGGACATCTCAAGTCAAGTACTTGAAACACTGGTTGTGAACAAAATGCAAGGAATAATTAATGTTGCTGTGGTCAAATGTCCAGGATTTGGAGAAGGAAAGAAAGCTTTATTGCAAGATATAGCCCTTTTGACAGGTGCTGATTTCCTCTCTGGAGATTTGGGACTGACTCTTGACAGTGCAACGTCAGATCAGCTTGGCATTGCAAGAAAAGTAACCATAACAAGCAATTCAACAACCTTTGTTGCTGATCCTTCAACTAAACCTGAAATACAGGCAAGAATTTTGCAGATAAAGAAAGATCTCGCTGAAACTGATAGTTCGTATCTTTCAAGGAAGCTCTCTGAAAGGATTGCTAAACTCTCTGGTGGTGTGGCCATAATCAAGGTAGGAGCACATACAGAGACGGAACTCGAAGATCGGAAACTCAGAATTGAGGATGCAAAGAATGCAACGTTTGCTGCCATGGATGAAGGTATAGTACCTGGTGGTGGGGCTACCTATATTCATCTGGAAGAACAGATACCCATCATAAAGCACTCCATGGAAGATCCGGACGAGCAGATTGGTGCTGACATTGTGGCAAAGGCACTTGCTGCACCAGCCAAAGCAATTGCAACTAATGCAGGAGTTGATGGAGCTGTTGTCATAGAGAAGATCCGGACTTGTGACTGGAGAACAGGGTATGATGCAATGACGGGTAGATACCAAGATCTTCTCAATGCTGGAGTGGTTGATCCCTGTCGGGTCTCAAGGTGTGCCCTTCAAAATGCAGTATCTGTTGCTGGCATTGTTCTAACAACCCAAGCTGTATTGGTGGAGAAAACAAAGCCGCCCAAGTCAGCAGTTCCTCGTCTCCCTGGAATAACTCCTTAA 1752 43.55 MSLCFSSSLSLPQPSFFSNLNGEQRVCGLWRNPRIFRSLRVRAGPKRISFDRECREGLQAGIDKLADAVSLTLGPKGRNVILSEAGTLKVINDGVTIARAIELSDAIENAGATLMQEVASKTNDVAGDGTTTAIILAREMIKSGLLVVAFGANPIGLKKGMDKTVRELVKVLKKKSFPVKGRDDIRAVASISAGNDDFVGNLIAEAIDKIGPDGVISIESSSSSETSVIIEEGMKIDKGYMSPHFITNQDKSIVEFENAKVLVTDQKISTIKGIVPLLEKTTQLSVPLLIIAEDISSQVLETLVVNKMQGIINVAVVKCPGFGEGKKALLQDIALLTGADFLSGDLGLTLDSATSDQLGIARKVTITSNSTTFVADPSTKPEIQARILQIKKDLAETDSSYLSRKLSERIAKLSGGVAIIKVGAHTETELEDRKLRIEDAKNATFAAMDEGIVPGGGATYIHLEEQIPIIKHSMEDPDEQIGADIVAKALAAPAKAIATNAGVDGAVVIEKIRTCDWRTGYDAMTGRYQDLLNAGVVDPCRVSRCALQNAVSVAGIVLTTQAVLVEKTKPPKSAVPRLPGITP* 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1508153 1513345 + Vvi1g148 Vvi1g148 769348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g148 583 Gene3D GroEL 233 414 IPR027409 -
Vvi1g148 583 Gene3D - 178 451 IPR027410 -
Vvi1g148 583 SUPERFAMILY GroEL-intermediate domain like 178 247 IPR027410 -
Vvi1g148 583 ProSitePatterns Chaperonins cpn60 signature. 446 457 IPR018370 GO:0005524|GO:0006457
Vvi1g148 583 Gene3D - 48 564 IPR027413 -
Vvi1g148 583 TIGRFAM GroEL: chaperonin GroL 45 569 IPR001844 GO:0042026|GO:0140662
Vvi1g148 583 SUPERFAMILY GroEL apical domain-like 226 417 IPR027409 -
Vvi1g148 583 PRINTS 60kDa chaperonin signature 69 95 IPR001844 GO:0042026|GO:0140662
Vvi1g148 583 PRINTS 60kDa chaperonin signature 124 151 IPR001844 GO:0042026|GO:0140662
Vvi1g148 583 PRINTS 60kDa chaperonin signature 309 332 IPR001844 GO:0042026|GO:0140662
Vvi1g148 583 PRINTS 60kDa chaperonin signature 391 416 IPR001844 GO:0042026|GO:0140662
Vvi1g148 583 PRINTS 60kDa chaperonin signature 439 460 IPR001844 GO:0042026|GO:0140662
Vvi1g148 583 Pfam TCP-1/cpn60 chaperonin family 65 567 IPR002423 GO:0005524
Vvi1g148 583 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 31 582 - -
Vvi1g148 583 PANTHER CHAPERONIN 60 SUBUNIT ALPHA 2, CHLOROPLASTIC 31 582 - -
Vvi1g148 583 SUPERFAMILY GroEL equatorial domain-like 49 563 IPR027413 -
Vvi1g148 583 CDD GroEL 46 566 IPR001844 GO:0042026|GO:0140662
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g148 - - - vvi:100257653 1070.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00896 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001380 3 4 2 3 2 2 3 2 2 2 1 2 3 2 2 3 2 3 3 2 2 2 3 2 3 2 2 5 3 2 74