Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g150 ATGGAAAAATCAGGAGAGCAAATGGTGGATGTGAGGTCGGTGGTCGAAGCCATTTCGACTGATAATGAAGATGCACCTTTGTACCAGGTTGAGAGCCTCTGCATGCGCTGCACCCAAAACGGAACAACAAGGTTTTTGTTTACTGAAATTCCACACTTCAGAAAGATATTGTTGTCAGCCTTTGAATGCCCACATTGTGGTGAGAGGAACAATGAAGTTCAGTTTGCTGGTGAATTACAACCCAGAGGGTGTTCTTACAGTCTGCATTTTTCAGCGGGTGATCAGAAGATGCTCAACCGACAGGTAGTGAAATCAGAATCTGCCACTATCAAGATTCCTGAATTGGATTTTGAGATCCCTCCAGAGGCTCAGTGTGGAAGTCTATCAACAGTGGAAGGAATATTGACAAAAGCCGTGGATGATTTACAGGCCCTTCAGGAAGAACGCAAGAAAGTGGATTCTCAGACTGCGGAAGCAATAGATCAGTTTTTGTTAAAATTGAAGCCTTGTGCAACAGGAGATTCATCTTTCACCTTCAACCTGGATGATCCTGCTGGCAACAGCTTCATTGAGAACCCGTTTGCTCCATCTCCGGATCCATCATTAACTATCAAGTTCTACAAGCGAAGCCCTGAGCAACAAGCATCATTGGGCTACCTTGTTGACTCATCACAGTTGGGAGAGTCTTGTGATGAGGAGTCAATAAAAGAAGTAAAGAATACATCTGATCAAATGAAAAGAGAACCACATGGATCAATTGGAGCCGCAGCCGGCCATCGAGCTATTGCTCAGGTTAATAGTGCAGAGATTGCTGAAAATTTGTTTCGATATTCTACACCAGAAGAGGTAATGACTTTCCCATCAACATGTGGAGCTTGTGCTGCAAGATGCGAGACCCGAATGTTTGTCACCAACATTCCATATTTCCAAGAAGTAATTGTTATGGCTTCATCTTGTGATGGTTGTGGCTACCGAAATTCCGAGTTGAAGCCTGGTGGTCGAATTCCTGTTAAAGGAAAGAAAATTACTGTTTGTGTGAAGAATGTTAATGATCTAAGCCGTGATGTAATAAAGTCAGATACTGCAGGTGTGAGTGTCCCAGAGCTTGACTTGGAGCTGGCTAGTGGCACTTTGGGTGGAGTTGTTACAACTGTTGAAGGCTTGATTACAAAAATTTGTGAAAACCTTGAGAGAGTACACGGATTTACTTTTGGGGACAGTCTCGATGATTCTAAAAGAAGCAAATGGCAAGATTTCAGAATGAGGCTAAGCAAGCTTCTGAGTCTGGAAGAGCCTTGGACTTTAATCATTGATGACGCACTAGCAAATTCTTTTGTTGCACCAACCACTGATGATATCAAAGATGACCATCAGTTAACGTTTGAGGAATACGAGAGGTCATGGGAGCAGAATGAGGAGCTGGGTCTTAATGATATGGACACTTCTTCAGCAGATGCCGCATACAACTGA 1470 43.27 MEKSGEQMVDVRSVVEAISTDNEDAPLYQVESLCMRCTQNGTTRFLFTEIPHFRKILLSAFECPHCGERNNEVQFAGELQPRGCSYSLHFSAGDQKMLNRQVVKSESATIKIPELDFEIPPEAQCGSLSTVEGILTKAVDDLQALQEERKKVDSQTAEAIDQFLLKLKPCATGDSSFTFNLDDPAGNSFIENPFAPSPDPSLTIKFYKRSPEQQASLGYLVDSSQLGESCDEESIKEVKNTSDQMKREPHGSIGAAAGHRAIAQVNSAEIAENLFRYSTPEEVMTFPSTCGACAARCETRMFVTNIPYFQEVIVMASSCDGCGYRNSELKPGGRIPVKGKKITVCVKNVNDLSRDVIKSDTAGVSVPELDLELASGTLGGVVTTVEGLITKICENLERVHGFTFGDSLDDSKRSKWQDFRMRLSKLLSLEEPWTLIIDDALANSFVAPTTDDIKDDHQLTFEEYERSWEQNEELGLNDMDTSSADAAYN* 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1515089 1528970 + Vvi1g150 Vvi1g150 769350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g150 489 SMART zpr1 32 192 IPR004457 GO:0008270
Vvi1g150 489 SMART zpr1 288 448 IPR004457 GO:0008270
Vvi1g150 489 Coils Coil 135 162 - -
Vvi1g150 489 Gene3D ZPR1, A/B domain 79 219 IPR042451 -
Vvi1g150 489 Gene3D ZPR1, A/B domain 334 476 IPR042451 -
Vvi1g150 489 Gene3D ZPR1, zinc finger domain 22 77 IPR042452 -
Vvi1g150 489 Gene3D ZPR1, zinc finger domain 278 333 IPR042452 -
Vvi1g150 489 PANTHER ZINC FINGER PROTEIN ZPR1 4 489 IPR040141 -
Vvi1g150 489 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 4 489 - -
Vvi1g150 489 Pfam ZPR1 zinc-finger domain 288 446 IPR004457 GO:0008270
Vvi1g150 489 Pfam ZPR1 zinc-finger domain 32 191 IPR004457 GO:0008270
Vvi1g150 489 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 289 480 IPR004457 GO:0008270
Vvi1g150 489 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 34 216 IPR004457 GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g150 K06874 - vvi:100254202 968.763