Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g151 ATGGAGAGCAGTGAAGAAGAAGACGATTTGGACTACCCAATCAATGATGGCATCACTCCCCAATCCAAGATTGACTCCATCTATCAGTCCAATACCGAAAAGGGAATCAGAAAGCTTTGTTGTGAGCTCTTAGTTTTGAAGGATGCGGTGGAAAACTTACGTGGGAATATGCGTACTAAGTACTTGGCTTTCCTGAGGATATCTGATGAAGTTGTTGAAATGGAGCATGAGTTAATTGAGCTGCAAAAGCATATTTCTGCACAAGGGATTCTTGTGCAGGATTTGATGAGTGGTGTGTGCCGTGAATTGGAAGAGTGGAACAAAGCTAATGGTGATATTCATGAAGCTCAACAAGATCCTCAAATTGGTGAACTTCAAGATCCTTTTCCAAATAACATAGTTGATGCCAAGACAATATTCTTGGAGAAAATTGATGTTCTCTTGGCTGAACATAAAGTGGAAGAAGCAATAGAGGCTTTAGATGCGGAAGAGAGAAATTCTCCAGACTTGAAAAGCTCGGGAGATACTTCACCTACTGAAGCATCTTCTTACAGGTCTGCTTTCTTGAAAAGAAAGGCAATGCTTGAGGATCAGCTAGTTGAGATCACTGAACAACCTTTAGTTGGTACCCTGGAACTGAAGAAGGCTCTATCTGGTTTGATAAAACTGGGAAAAGGTCCTTTGGCACATCAGCTACTTCTAAAATCATATGGTTCACGCCTCCAAAAGAGCATTGAGGCTTTTCTTCCTGCATGTTCTAGCTGCCCCAAAACATATTCAGCCACCTTATCTAAGCTTGTATTTTCTCTGATCTCATTGACAACAAAAGAATCAGGTTCAATATTTGGTGATGATCCCGCTTATACCAACAGAATTGTTCAGTGGGCAGAGTGGGAAATTGAATCTTTTGTACGACTAGTGAAGGAGAATGCACCCCCTTCAGAGTCCATTTCTGCTCTACGTGCAGCTAGCATTTGCATTCAGGCTAGTCTGAGCCACTGCTCACTGTTGGAATCACAAGGCCTGAAACTCTCAAAGTTGCTTATGGTGCTCTTGCGGCCATATATTGAAGAAGTTTTGGAGTTAAATTTTAGACGGGCTAGAAGAGTGATTCTTGACTTGGATGCAATTGATGAAAGCTTCCCATTGTCACCCTGCTTTGCATCTCCATTGTCTGCTTTTGCAACATCATCAGATACCATGCTCATTGACAGCGGAATCAGGTTTATGTACAATGTCAATGAAATAGTGGAACAGCTAACCCCACTCACCATTTTGCACTTTGGAGGAAGCATATTAACTAGAATTTCACAGCTGTTTGCTAAATACGTGGGTGTTCTAATTAAAGCCTTACCTGGCCCCTCTGAAGATGATAATCTTACAGAGCTGAAAGAGGACATACCCTTCAGGGCTGAAACAGATGCACAACAGCTTGCACTTTTGGGAATAGCATTTACTGTGGCAGAGCTATTACCGATGGCTATATGGAGAACACAGAATGAATGCAAGGAACCAGGTAGTGGACCCACTGAAAACATTGTGCATACTGCAAGTGCCATGGAATCTAAGGAATGGAGGCGCCATATTCAGCATTCATTGGATGAGCTTAGAGATCACTTCTGTCGACAATATGTTTTGAATTTTATCTATTCAAGGGAAGGGAAAACACAATTGAATGCACAAATTTATTTAAATGGGAAAGGAGATGACCTGAGTTGGGACTCTGGCCCACTGCCTTCACTGCCTTTCCAGATGTTATTTGTGAAGCTGCAGCAGTTAGCAACTGTGGCTGGAGATGTATTACTTGGAAAGGAGAAAATACAGAAAATTTTGCTTGCCAGGCTAACAGAGACAGTGGTAATATGGTTGTCTGATGAACAGGAATTCTGGGGTGTATTTGAGGATGAGTCAGCTCCCCTTCGGCCAATCGGGTTGCGGCAGTTGATTCTTGATATGCACTTCACCGTTGAAATTGCACGTTTTGCTGGTTACTCATCACGACATGTGCACCAGATTGCAGCAGCCATAATTGCTCGTGCCATTAGGACCTTCTCTGCTAGAGGCATAGACCCACAAAGTGCACTCCCTGAGGATGAATGGTTTGTGGAAACTGCCAAAGGAGCAATACACAAGCTTATGTCAGACGCTTCAGACACTGATGATGAACACATCATTGATGAACACCTCATTGACGAACACATGATTATGCATGATGAGATGGCCTCTGATTCTGATGACAGTCCGTCTTCCCTTTCATCAGTAGAAAGTTCCGAGTCGTTTGCTTCTGCAAACATGGGTGACTTAGAAAGCCCCACTGACTTGACTGATCCTGAGAACTGA 2340 42.91 MESSEEEDDLDYPINDGITPQSKIDSIYQSNTEKGIRKLCCELLVLKDAVENLRGNMRTKYLAFLRISDEVVEMEHELIELQKHISAQGILVQDLMSGVCRELEEWNKANGDIHEAQQDPQIGELQDPFPNNIVDAKTIFLEKIDVLLAEHKVEEAIEALDAEERNSPDLKSSGDTSPTEASSYRSAFLKRKAMLEDQLVEITEQPLVGTLELKKALSGLIKLGKGPLAHQLLLKSYGSRLQKSIEAFLPACSSCPKTYSATLSKLVFSLISLTTKESGSIFGDDPAYTNRIVQWAEWEIESFVRLVKENAPPSESISALRAASICIQASLSHCSLLESQGLKLSKLLMVLLRPYIEEVLELNFRRARRVILDLDAIDESFPLSPCFASPLSAFATSSDTMLIDSGIRFMYNVNEIVEQLTPLTILHFGGSILTRISQLFAKYVGVLIKALPGPSEDDNLTELKEDIPFRAETDAQQLALLGIAFTVAELLPMAIWRTQNECKEPGSGPTENIVHTASAMESKEWRRHIQHSLDELRDHFCRQYVLNFIYSREGKTQLNAQIYLNGKGDDLSWDSGPLPSLPFQMLFVKLQQLATVAGDVLLGKEKIQKILLARLTETVVIWLSDEQEFWGVFEDESAPLRPIGLRQLILDMHFTVEIARFAGYSSRHVHQIAAAIIARAIRTFSARGIDPQSALPEDEWFVETAKGAIHKLMSDASDTDDEHIIDEHLIDEHMIMHDEMASDSDDSPSSLSSVESSESFASANMGDLESPTDLTDPEN* 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1529722 1536715 + Vvi1g151 Vvi1g151 769351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g151 779 PANTHER EXOCYST COMPLEX COMPONENT 8 1 779 IPR033961 GO:0000145|GO:0006887
Vvi1g151 779 SUPERFAMILY Cullin repeat-like 140 360 IPR016159 -
Vvi1g151 779 MobiDBLite consensus disorder prediction 739 779 - -
Vvi1g151 779 MobiDBLite consensus disorder prediction 745 769 - -
Vvi1g151 779 Coils Coil 146 166 - -
Vvi1g151 779 Gene3D - 137 247 IPR042561 -
Vvi1g151 779 PANTHER EXOCYST COMPLEX COMPONENT EXO84C 1 779 - -
Vvi1g151 779 Gene3D - 255 359 IPR042560 -
Vvi1g151 779 MobiDBLite consensus disorder prediction 159 181 - -
Vvi1g151 779 Pfam Exocyst component 84 C-terminal 141 344 IPR032403 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g151 K19986 EXOC8, SEC84; exocyst complex component 8 - vvi:100249093 1476.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g151 Blo01g00906 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00925 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009146 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 34