Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g159 ATGGGCAGGTCTCTTCTCTCCTCTACGGTCATTCCCGTGAGATTTCCACAGATACCCAAATCAATCCCGCCATTCAATCGATCAATCCACCCAATTCCGCCCACTTTCGCTCCAAATTATCAACGCATTCGCGGGTTTTCTATTCCCACAAAAACCTTTTGCACAAAGGCTGTATTATCTGAATCTCCCAATCCCAAACGCTACCCAAAAATGGGTTCAGATTCTGTTGGCCCAATTCCGCCTTCTCAGCTCATCCAAGTGGTCGAACATGCTGCCAACACCGGTGCTCAGGTTGTGATGGAAGCTGTTAATAAGCCTCGGAATGTTACCTATAAAGGGCTCACCGACTTGGTGACTGACACAGATAAAATGAGTGAGGCTGCTATCCTAGAAGTTGTAAGAAAAAACTTTGGAGATCACCTCATTCTTGGGGAGGAGGGAGGGCTCATCGGAGATACTTCTTCTGATTATCTCTGGTGTATCGATCCTTTAGATGGAACAACAAATTTTGCACACTGCTATCCTAGCTTTGCAGTTTCTGTGGGAGTTCTGTTTCGAGGCAAACCAGCTGCTGCTGCTGTGGTGGAGTTTGTTGGGGGCCCCATGTGTTGGAATACCCGTATATTTTCTGCAACCACTGGTGGGGGAGCATTTTGTAACGGGCAAAAGATTCATGCAAGCCAAACAGATCTGGTAGAGCAATCTCTTCTAGTGACTGGGTTTGGTTATGAGCATGATGACGCATGGGCTACCAACATAGATTTGTTTAAAGAGTTTACTGATGTCAGCAGGGGTGTGCGCAGGCTTGGTGCTGCTGCAGTGGACATGTGCCATGTTGCTCTTGGGATTGTAGAAGCGTATTGGGAATACCGTCTAAAACCATGGGATATGGCTGCTGGCGTTTTGATAGTTGAAGAGGCTGGTGGGACAGTTACCTGCATGGATGGTGGCAAATTTTGTGTATTTGACAGATCTGTTTTGGTATCCAATGGTGTGTTGCACTCAAAGCTTTTGGAGAGAATTGGTCCTGCGACAGAAAAACTGAAGAAGAAAGGGATTGATTTCTCATTGTGGTACAAGCCAGAAAATTACAACACAGACTTTTGA 1107 46.07 MGRSLLSSTVIPVRFPQIPKSIPPFNRSIHPIPPTFAPNYQRIRGFSIPTKTFCTKAVLSESPNPKRYPKMGSDSVGPIPPSQLIQVVEHAANTGAQVVMEAVNKPRNVTYKGLTDLVTDTDKMSEAAILEVVRKNFGDHLILGEEGGLIGDTSSDYLWCIDPLDGTTNFAHCYPSFAVSVGVLFRGKPAAAAVVEFVGGPMCWNTRIFSATTGGGAFCNGQKIHASQTDLVEQSLLVTGFGYEHDDAWATNIDLFKEFTDVSRGVRRLGAAAVDMCHVALGIVEAYWEYRLKPWDMAAGVLIVEEAGGTVTCMDGGKFCVFDRSVLVSNGVLHSKLLERIGPATEKLKKKGIDFSLWYKPENYNTDF* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1572792 1582311 - Vvi1g159 Vvi1g159 769359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g159 368 CDD IMPase 84 330 IPR033942 GO:0008934|GO:0046855
Vvi1g159 368 ProSitePatterns Inositol monophosphatase family signature 2. 295 309 IPR020550 GO:0046854
Vvi1g159 368 PANTHER PHOSPHATASE IMPL1, CHLOROPLASTIC 1 366 - -
Vvi1g159 368 SUPERFAMILY Carbohydrate phosphatase 82 343 - -
Vvi1g159 368 Gene3D - 82 224 - -
Vvi1g159 368 Pfam Inositol monophosphatase family 83 340 IPR000760 GO:0046855
Vvi1g159 368 ProSitePatterns Inositol monophosphatase family signature 1. 159 172 IPR020583 -
Vvi1g159 368 Gene3D - 225 349 - -
Vvi1g159 368 PRINTS Inositol monophosphatase superfamily signature 116 136 IPR000760 GO:0046855
Vvi1g159 368 PRINTS Inositol monophosphatase superfamily signature 138 154 IPR000760 GO:0046855
Vvi1g159 368 PRINTS Inositol monophosphatase superfamily signature 159 175 IPR000760 GO:0046855
Vvi1g159 368 PRINTS Inositol monophosphatase superfamily signature 214 237 IPR000760 GO:0046855
Vvi1g159 368 PRINTS Inositol monophosphatase superfamily signature 261 282 IPR000760 GO:0046855
Vvi1g159 368 PRINTS Inositol monophosphatase superfamily signature 292 316 IPR000760 GO:0046855
Vvi1g159 368 PANTHER INOSITOL MONOPHOSPHATASE 1 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g159 K01092 E3.1.3.25, IMPA, suhB; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] - vvi:100249170 744.577
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g159 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00897 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011090 1 2 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31