Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g163 ATGCAGCTTTTGTGTTTAATGCCTACCTGCAGGAGCATGAACTATGCCCTCCCAGTAAAGGGAATGGTGGGGGAAAGAGGAAAAACCCCAGTTCATGAAAAGCAAAAACAGGTGAAGTTCCTCAAGGGTTTGGCTCCACCTCTCATGGCTGCAGTTGTTGCCTTATCTCCTATCTGCAACACCCCAGTATCACTTGCACAAACCACAGATATACAAAGAGGAGCTGCATTGTTTGGTCGAGCTTGTATTGGATGCCATGATGCTGGTGGAAACATCATACAACCAGGTGCAACACTCTTCTTAAAGGATCTACAAAGAAATGGAGTTGACACTGAGGAGGAGATATATCGTGTGACATACTATGGCAAGGGACGAATGCCGGGCTTTGGTGAGAACTGCACACCAAGGGGCCAATGCACATTTGGGGCTCGTTTACAGGAAGAAGAAATTAAGCTTTTAGCTGAATTTGTAAAGCTACAGGCTGATCAAGGGTGGCCAAACTTAGAAATTTCTGGAGATTGA 522 45.59 MQLLCLMPTCRSMNYALPVKGMVGERGKTPVHEKQKQVKFLKGLAPPLMAAVVALSPICNTPVSLAQTTDIQRGAALFGRACIGCHDAGGNIIQPGATLFLKDLQRNGVDTEEEIYRVTYYGKGRMPGFGENCTPRGQCTFGARLQEEEIKLLAEFVKLQADQGWPNLEISGD* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1610161 1612639 + Vvi1g163 Vvi1g163 769363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g163 173 PANTHER CYTOCHROME C6, CHLOROPLASTIC 5 172 IPR023655 GO:0005506|GO:0009055
Vvi1g163 173 Gene3D - 67 171 IPR036909 GO:0009055|GO:0020037
Vvi1g163 173 ProSiteProfiles Cytochrome c family profile. 69 161 IPR009056 GO:0009055|GO:0020037
Vvi1g163 173 Pfam Cytochrome C oxidase, cbb3-type, subunit III 70 135 IPR009056 GO:0009055|GO:0020037
Vvi1g163 173 SUPERFAMILY Cytochrome c 63 166 IPR036909 GO:0009055|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g163 K08906 petJ; cytochrome c6 - vvi:100250897 348.591
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012650 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 28