Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g166 ATGGACGTTCAGAGGATGACTCTTTTTCTTCCCAAACCCCAAATAGCACTTTGTCCAAAGGAGAAGTGTCCTACTTTCAGATCCCCTTTCAAGCACATTATTCGAATGGCTCGATCTTCAATAGATGAGACTTCAGAATCTGGTGCCTTTACCAGAACTCCTTCAGCTTTCCGTAGTGTCATATCAAGGGATCCAAATGCCCCTTTCCCAGCAGAGTCTGGAAGGTATCATCTTTATATATCATATGCATGTCCCTGGGCATGCAGGTGCCTTTCATACTTGAAGATCAAAGGACTTGACAACGTCATTGCTTTCACGGCAGTCAAATCCAAATGGGAAAGAACAAAGGACGGTGATGAGCATATGGGATGGGCTTTTCCTGCTTCAGAAACTGAAGAACCAGGAGCTGAGCCCGACCCCTTGTATGGAGCAAGAAGTATAAGGCAACTTTATGAACTGGCCAGCGCAAACTACACTGGAAAATATTCTGTTCCAGTTCTATGGGATAAGAAACTCAAAACAATCGTAAATAACGAAAGTTCAGAGATAATCCGCATGCTTAATTCTGAATTCAATGATATGGCAGAGAATGCAGCTCTGGACCTATATCCTCCTCACTTGCAGCCCCAGATTGATGAGATTAATGAATGGATATATGACAGGATAAACAATGGGGTTTATAAATGTGGTTTTGCTAAGAAGCAAGGGCCTTACAATGAGGCTGTAGGAAAACTATATGAAGCTTTAGATAGATGTGAGGACATACTGAGCAAGCAACGGTACATATGTGGGAACTTGCTGTCCGAGGCTGATATAAGGTTGTTTGTCACTCTCATAAGATTTGATGAGGTTTATGCGGTTCACTTCAAATGCAACAAGAAACTGATACGGGAATACCCGAATCTGTTGAATTACAGCAAAGACATTTTCCAAATCCCAGGCATGAGCAGCACAGTGAACATGGATCACATCAAGCGCAACTACTATGGAAGCCATCCTTCCATCGATCCACTTGGCATCATCCCCATCGGCTCTCATCTAAACTACTCCTCTCCCCATGATAGAGCTAAGTTTTCTATTTAG 1083 42.84 MDVQRMTLFLPKPQIALCPKEKCPTFRSPFKHIIRMARSSIDETSESGAFTRTPSAFRSVISRDPNAPFPAESGRYHLYISYACPWACRCLSYLKIKGLDNVIAFTAVKSKWERTKDGDEHMGWAFPASETEEPGAEPDPLYGARSIRQLYELASANYTGKYSVPVLWDKKLKTIVNNESSEIIRMLNSEFNDMAENAALDLYPPHLQPQIDEINEWIYDRINNGVYKCGFAKKQGPYNEAVGKLYEALDRCEDILSKQRYICGNLLSEADIRLFVTLIRFDEVYAVHFKCNKKLIREYPNLLNYSKDIFQIPGMSSTVNMDHIKRNYYGSHPSIDPLGIIPIGSHLNYSSPHDRAKFSI* 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1634733 1639729 - Vvi1g166 Vvi1g166 769366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g166 360 Gene3D Glutaredoxin 33 210 - -
Vvi1g166 360 PANTHER - 23 360 - -
Vvi1g166 360 PIRSF GST 31 356 IPR016639 GO:0004364
Vvi1g166 360 CDD GST_C_Omega_like 204 344 - -
Vvi1g166 360 SUPERFAMILY Thioredoxin-like 58 193 IPR036249 -
Vvi1g166 360 SUPERFAMILY GST C-terminal domain-like 207 357 IPR036282 -
Vvi1g166 360 Gene3D - 211 360 - -
Vvi1g166 360 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 204 331 IPR010987 -
Vvi1g166 360 SFLD Glutathione Transferase (cytosolic) 41 357 IPR040079 -
Vvi1g166 360 Pfam Glutathione S-transferase, C-terminal domain 238 307 - -
Vvi1g166 360 SFLD Xi.1 41 357 IPR016639 GO:0004364
Vvi1g166 360 Pfam Glutathione S-transferase, N-terminal domain 83 189 IPR004045 -
Vvi1g166 360 PANTHER GLUTATHIONYL-HYDROQUINONE REDUCTASE 23 360 IPR016639 GO:0004364
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g166 K07393 ECM4, yqjG; glutathionyl-hydroquinone reductase [EC:1.8.5.7] - vvi:100245685 747.658
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g166 Blo01g00908 . . . . . . . . . . Cma18g00559 . . . Cpe09g00681 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007165 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 3 2 36