Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g172 ATGTTATGTATCTTTGGAATAGATTCCATTTTGAGAGGGAGAGATGCTGTCTATTCCATCTCTTCTTTGGTTTGTATAATTGTATTACGTATACAGATAAATAAATCTGGCCACCTTCTTCTCCAGCTACACCCGAACCGCGAATTCCTCCATATGTTGATTGTTGAATGCACATCGAAGTACATATTTGTAGAACCTAGAAGTTGCAAGGGTGATGTCCAATGGAGAGCAGAGAATACAAACGGTGGTGTGGTTGAGAAAGGCAAACGCGACAGTTTGTTTATTGACAAGCGTGGCAAATTTAGAAGCTTTAATTTCAAAAAACAATCCAGGAAAAAGGGTGGTTCTTTAAGGGGCCGAGGATGGAAATATGGATCTGGTTTTGTTGATGGGATTTTCCCTGTAATGAGCCCCATTGCTCAGCAGATTCTCGACTTTGTACAGAAGGAAGAGCGTTCAAATAGAATTTGGGGTTCACTTGATTCTCTCTCCCCCAATCACACCACCTGGGATGATATCATTAATGTAGCTGTCCAACTTCGTCTGAATAAACAATGGGATGCGATTGTGCTGATCTGTGGATGGATATTGTACAGGAGCTCCTTCCATCCAGATGTCATCTGTTACAATTTACTTATAGATGCTTATGGGCAGAAATCACTTTACAAGAAGGCAGAATCCACATATTTAGAACTTCTTGAAGCACGATGTGTCCCTACTGAAGATACATATGCCCTTCTTCTAAAGGCCTACTGCACATCAGGGCTGCTGGAGAAAGCTGAAGCTGTTTTTGCTGAGATGCGAAAATATGGCTTCCCCCCAAGTGCAGTTGTGTACAATGCTTACATTGATGGGCTAATGAAGGGAGGAGACACCCAAAAGGCCGTGGAGATCTTTGAGAGGATGAAGAGAGATCGCTGTCAACCATCTACTGCAACTTACACAATGTTGATCAACTTATATGGAAAGGCTAGCAAGTCCTATATGGCCTTAAAGGTGTTTCATGAAATGAGGAGTCAAAAGTGTAAGCCTAATATCTGCACATTCACTGCTCTGGTGAATGCATTTGCAAGAGAGGGGCTTTGTGAGAAAGCAGAAGAAATATTTGAGCAGCTGCAAGAAGCTGGGCTTGAACCGGATGTGTACGCTTATAATGCCCTCATGGAAGCCTACAGTCGCGCAGGTTTTCCCTATGGGGCTGCAGAGATATTTTCCCTCATGCAGCACATGGGGTGTGAACCAGATCGAGCTTCATACAATATCATGGTGGATGCATATGGAAGGGCTGGTCTTCATGAGGATGCACAAGCCGTGTTTGAGGTGATGAAGCGATTGGGGATAACTCCCACTATGAAATCCCACATGCTGCTTCTATCTGCCTACTCCCGAGCCGGCAAAGTGGCAAAATGCGAAGAGATCGTGAACCAGATGCACAAATCAGGGATCAAACCTGATACATTCGTCCTCAACAGTATGCTCAACCTGTATGGCCGGCTAGGCCAGTTTGAGAAAATGGAAGAAGTCTTGACTGCAATGGAGAAAGGACCATATCCAGCTGATATCAGCACATACAACATCCTGATCAACATATACGGCAGGGCGGGATTCTTCGCCAGAATGGAAGAACTTTTCAGATCACTTCCTGCTAGAAACTTGATACCGGACGTTGTCACATGGACTTCACGAATTGGAGCCTACTCAAGAAGGAAACAGTACAATCGATGCCTGGAAGTGTTTGAAGAAATGATCGATGCCGGGTGTTACCCAGATGGAGGAACTGCCAAGGTACTTCTCTCGGCTTGTTCAAATGGAGATCAAATCCAAGAGGTTACTACTGTAATTAGAACAATGCATAAAGACATGAGAACTTCATTATAA 1878 43.88 MLCIFGIDSILRGRDAVYSISSLVCIIVLRIQINKSGHLLLQLHPNREFLHMLIVECTSKYIFVEPRSCKGDVQWRAENTNGGVVEKGKRDSLFIDKRGKFRSFNFKKQSRKKGGSLRGRGWKYGSGFVDGIFPVMSPIAQQILDFVQKEERSNRIWGSLDSLSPNHTTWDDIINVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTMHKDMRTSL* 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1692023 1696196 + Vvi1g172 Vvi1g172 769372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g172 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Vvi1g172 625 Pfam Pentacotripeptide-repeat region of PRORP 283 430 IPR033443 -
Vvi1g172 625 SUPERFAMILY TPR-like 216 376 IPR011990 GO:0005515
Vvi1g172 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Vvi1g172 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Vvi1g172 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Vvi1g172 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Vvi1g172 625 Pfam Pentatricopeptide repeat domain 438 497 IPR002885 -
Vvi1g172 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 589 IPR002885 -
Vvi1g172 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Vvi1g172 625 Gene3D Tetratricopeptide repeat domain 141 288 IPR011990 GO:0005515
Vvi1g172 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Vvi1g172 625 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 106 623 - -
Vvi1g172 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 520 554 IPR002885 -
Vvi1g172 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Vvi1g172 625 TIGRFAM PPR: pentatricopeptide repeat domain 557 590 IPR002885 -
Vvi1g172 625 TIGRFAM PPR: pentatricopeptide repeat domain 418 450 IPR002885 -
Vvi1g172 625 TIGRFAM PPR: pentatricopeptide repeat domain 523 556 IPR002885 -
Vvi1g172 625 TIGRFAM PPR: pentatricopeptide repeat domain 382 415 IPR002885 -
Vvi1g172 625 TIGRFAM PPR: pentatricopeptide repeat domain 277 310 IPR002885 -
Vvi1g172 625 TIGRFAM PPR: pentatricopeptide repeat domain 313 346 IPR002885 -
Vvi1g172 625 TIGRFAM PPR: pentatricopeptide repeat domain 488 514 IPR002885 -
Vvi1g172 625 TIGRFAM PPR: pentatricopeptide repeat domain 456 486 IPR002885 -
Vvi1g172 625 TIGRFAM PPR: pentatricopeptide repeat domain 347 381 IPR002885 -
Vvi1g172 625 TIGRFAM PPR: pentatricopeptide repeat domain 207 241 IPR002885 -
Vvi1g172 625 TIGRFAM PPR: pentatricopeptide repeat domain 243 275 IPR002885 -
Vvi1g172 625 Pfam PPR repeat 522 549 IPR002885 -
Vvi1g172 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 519 IPR002885 -
Vvi1g172 625 Pfam PPR repeat family 554 602 IPR002885 -
Vvi1g172 625 Pfam PPR repeat family 204 253 IPR002885 -
Vvi1g172 625 Gene3D Tetratricopeptide repeat domain 290 398 IPR011990 GO:0005515
Vvi1g172 625 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 106 623 - -
Vvi1g172 625 Gene3D Tetratricopeptide repeat domain 399 513 IPR011990 GO:0005515
Vvi1g172 625 Gene3D Tetratricopeptide repeat domain 514 624 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g172 - - - vvi:100257798 1150.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g172 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002157 3 3 1 2 3 2 2 2 2 2 2 2 2 2 2 3 2 3 3 2 1 1 1 1 2 1 2 2 1 2 59