Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g174 ATGGCGTCTTCTCTCTGCAACTGGCTGATCTTCTGTCTGGTTCTACAGGCGATGACGGCGGCTGCCTCGGTGGCCGGAGCGGAGGAATTACAGCAAGAGAAAGACAGAGTTAAGGATTTGCCGGGACAGCCGGCGGTGGAGTTCCGGCACTACGCAGGGTACGTGAAACTCCGGCCACAAGACGAGAAAGCACTCTTCTACTGGTTCTTTGAAGCCCAAGGCGGTGTTCTTGAAAAGCCTCTTGTGCTTTGGCTCAATGGAGGACCTGGATGCTCATCCATAGCTTATGGAGCTGCACAAGAACTCGGTCCGTTTCTTGTTAGGAGCAACGGAACTAAGCTTATCCTTAATGATTTTTCCTGGAACAAAGTTGCAAACATTCTGTTCCTGGAGGCACCTGTGGGAGTAGGGTTTTCATACACGAACAAATCATCGGATTTACTTAAGCTTGGTGATCGAATCACAGCTGAAGATTCTCATGCATTCTTAGTCCAATGGTTCAAGAGGTTCCCCAGCCTCAAAACCCATGATTTCTACATCACTGGAGAGAGCTATGCTGGTCACTATGTTCCTCAGCTTGCTGAGCTCATTTATGAAAGGAACAAAAGAAGCAGCAAAGACTTTTACATTAATCTCAAGGGTTTCATGATTGGGAATGCAGTAATCAATGATGAAACGGACGATATGGGCCTCATTGAGTTCGCATGGAGTCATGCAATCATATCAGACCAAATCTACCATGGCATAATGAAGAATTGCGACTTCAAAAGTGGCAACCTTACAAACCTCTGCATTAAATATGTCGAGGGCTTCTTCGAGGCTTATCTCGATATCGACGTGTATAGCATTTACACACCTGTGTGCCTCAGTTCTTCCAAAGAAACCTACCGAAAACTTGTCACTGCACCAAGACTCTTCGCACAACACGACCTCTGGCATCAGCTACCATCGGGATACGATCCATGTACAGAAGATTATGCTGAGAAATATTTCAACAGGGAGGATGTTCAGAAGGCCCTTCATGCCAATGTCACCAAACTCCCCTATCCATACACCACATGCAGTAAAGTTATTAGGAGGTGGAATGATTCGCCAGACACCGTGCTGCCCACCATTCAGAAGCTCTTAAAGGCTGGTCTGCGCATTTGGGTCTACAGTGGGGACACAGATGGGAGGGTGCCAGTGACATCAACAAGGTACAGCATAAACAAGATGGGGTTAAGGATTCAGCAAAAGTGGAGGGCATGGTTCGACAGGAAACAAGTGGCCGGTTGGGTGGTGACTTATGAGGGTGGCCTTACACTAGCAACCGTAAGAGGTGCAGGTCACCAGGTCCCCATCCTTGCACCTTCTCAGTCCCTTGCTCTCTTCTCTCATTTCCTCTCGGATGCCACCTTGCCGTCTTCCAGAGCCTAG 1416 48.16 MASSLCNWLIFCLVLQAMTAAASVAGAEELQQEKDRVKDLPGQPAVEFRHYAGYVKLRPQDEKALFYWFFEAQGGVLEKPLVLWLNGGPGCSSIAYGAAQELGPFLVRSNGTKLILNDFSWNKVANILFLEAPVGVGFSYTNKSSDLLKLGDRITAEDSHAFLVQWFKRFPSLKTHDFYITGESYAGHYVPQLAELIYERNKRSSKDFYINLKGFMIGNAVINDETDDMGLIEFAWSHAIISDQIYHGIMKNCDFKSGNLTNLCIKYVEGFFEAYLDIDVYSIYTPVCLSSSKETYRKLVTAPRLFAQHDLWHQLPSGYDPCTEDYAEKYFNREDVQKALHANVTKLPYPYTTCSKVIRRWNDSPDTVLPTIQKLLKAGLRIWVYSGDTDGRVPVTSTRYSINKMGLRIQQKWRAWFDRKQVAGWVVTYEGGLTLATVRGAGHQVPILAPSQSLALFSHFLSDATLPSSRA* 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1709971 1715657 - Vvi1g174 Vvi1g174 769374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g174 471 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 35 22 463 - -
Vvi1g174 471 Gene3D alpha/beta hydrolase 31 290 IPR029058 -
Vvi1g174 471 Gene3D - 322 359 - -
Vvi1g174 471 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 22 463 IPR001563 GO:0004185|GO:0006508
Vvi1g174 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 433 446 IPR001563 GO:0004185|GO:0006508
Vvi1g174 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Vvi1g174 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Vvi1g174 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Vvi1g174 471 ProSitePatterns Serine carboxypeptidases, histidine active site. 433 450 IPR033124 GO:0004185
Vvi1g174 471 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
Vvi1g174 471 Pfam Serine carboxypeptidase 42 462 IPR001563 GO:0004185|GO:0006508
Vvi1g174 471 Gene3D - 368 462 - -
Vvi1g174 471 SUPERFAMILY alpha/beta-Hydrolases 37 465 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g174 K16297 SCPL-II; serine carboxypeptidase-like clade II [EC:3.4.16.-] - vvi:100247487 970.304
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g174 . . . . . . . . . . . . Car04g01610 . Sed06g1836 . Cpe01g01385 Bhi07g01403 Tan04g0931 Cmetu05g1710 . . . . Cla05g02384 Cam05g2556 Cec05g2588 Cco05g2629 Clacu05g2557 Cmu05g2414 Cre05g2531 . . . . . . . . . . . . . . . . . . . . . . . . Cpe04g01421 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001535 1 2 4 0 1 2 3 2 2 2 2 2 4 3 3 4 2 3 3 2 3 2 1 3 2 2 2 2 3 5 72