Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g176 ATGGTTTCAATGGCGTCTTCTCTCTGCAACTTGCTGATCTTCTGCCTGGTTCTACAGGCGATGGCGGCGGCGGCGGCGGCCTCGGTGGCCGGAGCGGAGGAATTACAGCAAGAGAAAGACAGAGTTAAGGATTTGCCGGGACAGCCGGCGGTGGAGTTCCGGCACTACGCAGGGTACGTGAAACTCCGGCCACAAGACGAGAAGGCACTCTTCTACTGGTTCTTTGAAGCCCAAGGCGGTGTTCTTGAAAAGCCTCTTGTGCTTTGGCTCAATGGAGGACCTGGATGCTCATCCATAGCTTATGGAGCTGCACAAGAACTCGGTCCGTTTCTTGTTAGGAGCAATGGAACTCAGCTTATTCTTAATGATTTTTCCTGGAACAAAGTTGCAAACATTCTGTTCCTGGAGGCACCTGTGGGAGTAGGGTTTTCATATACGAACAAATCGACGGATTTGCTTAAGCTTGGTGATCGAATCACAGCTGAGGATTCTCATGCATTCTTAGTCCAATGGTTCAAGAGGTTCCCTAGCTTCAAATCCCATGATTTCTACATCACTGGAGAGAGCTATGCTGGCCACTATGTTCCTCAGCTTGCTGAGCTCATTTATGAAAGGAACAGAAAAAGCACCAAAGACTCTTACATTAATCTCAAGGGTTTCATGATTGGGAATGCAGTAATCAATGATGAAACAGACGATATGGGCCTCATTGAGTTCGCATGGAGTCATGCAATCATATCAGACCAACTCTACCATGGCATAATCAAGGAATGCGACTTCATAAGGGACAACCCTACAAACCTCTGCAGTAACCATATCAAGGGCCTCTTAGAGGCTTATTCCGATATCGACATGTATAGCATTTACACACCTGTATGCCTCAGTTCTTCCAAAGAAACCTACCGAAAATTTGTCACTGCACCAAGACTCTTCACACAACATGACCTCTGGCATCAGCTACCATCGGGATACGATCCATGTACAGAAGATTATGCTGAGAAATATTTCAACAGGGAGGATGTTCAGAAGGCCCTTCATGCCAATGTCACCAAACTCCCCTATCCATACACCCCATGCAGTAATGTTATTAGGAAGTGGAATGATTCGGCAGAGACCATGCTGCCCACAATTCAGAAGCTCTTAAAGGCTGGTCTGCGCATTTGGGTCTACTGTGGGGACACAGATGGGAGGGTGCCAGTGACATCAACAAGGTACAGCATAAACAAGATGGGGTTAAGGATTCAGAAAGGGTGGAGGGCATGGTTCCACAGGAAACAAGTGGCCGGTTGGGTGGTGACTTATGAGGGTGGCCTTACACTAGCAACCGTAAGAGGTGCAGGTCACCAGGTCCCCATCCTTGCACCTGCTCAGTCCCTTGCTCTCTTCTCTCATTTCCTCTCGGCTGCCAACTTGCCGTCTTCCAGAGCCTAG 1431 48.43 MVSMASSLCNLLIFCLVLQAMAAAAAASVAGAEELQQEKDRVKDLPGQPAVEFRHYAGYVKLRPQDEKALFYWFFEAQGGVLEKPLVLWLNGGPGCSSIAYGAAQELGPFLVRSNGTQLILNDFSWNKVANILFLEAPVGVGFSYTNKSTDLLKLGDRITAEDSHAFLVQWFKRFPSFKSHDFYITGESYAGHYVPQLAELIYERNRKSTKDSYINLKGFMIGNAVINDETDDMGLIEFAWSHAIISDQLYHGIIKECDFIRDNPTNLCSNHIKGLLEAYSDIDMYSIYTPVCLSSSKETYRKFVTAPRLFTQHDLWHQLPSGYDPCTEDYAEKYFNREDVQKALHANVTKLPYPYTPCSNVIRKWNDSAETMLPTIQKLLKAGLRIWVYCGDTDGRVPVTSTRYSINKMGLRIQKGWRAWFHRKQVAGWVVTYEGGLTLATVRGAGHQVPILAPAQSLALFSHFLSAANLPSSRA* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1727283 1732878 - Vvi1g176 Vvi1g176 769376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g176 476 Gene3D - 373 467 - -
Vvi1g176 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 134 IPR001563 GO:0004185|GO:0006508
Vvi1g176 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 135 145 IPR001563 GO:0004185|GO:0006508
Vvi1g176 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 196 IPR001563 GO:0004185|GO:0006508
Vvi1g176 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 438 451 IPR001563 GO:0004185|GO:0006508
Vvi1g176 476 ProSitePatterns Serine carboxypeptidases, serine active site. 185 192 IPR018202 GO:0004185
Vvi1g176 476 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 25 468 IPR001563 GO:0004185|GO:0006508
Vvi1g176 476 Gene3D alpha/beta hydrolase 36 295 IPR029058 -
Vvi1g176 476 ProSitePatterns Serine carboxypeptidases, histidine active site. 438 455 IPR033124 GO:0004185
Vvi1g176 476 SUPERFAMILY alpha/beta-Hydrolases 37 472 IPR029058 -
Vvi1g176 476 Pfam Serine carboxypeptidase 47 467 IPR001563 GO:0004185|GO:0006508
Vvi1g176 476 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 35 25 468 - -
Vvi1g176 476 Gene3D - 327 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g176 K16297 SCPL-II; serine carboxypeptidase-like clade II [EC:3.4.16.-] - vvi:100247487 885.174
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g176 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001535 1 2 4 0 1 2 3 2 2 2 2 2 4 3 3 4 2 3 3 2 3 2 1 3 2 2 2 2 3 5 72