Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g177 | ATGCTGGGTAAGAACAAAGTCAACTCAGCTCCAGCATCAGTTGCAACCCACACTAGGACCATTGGAATTATACATCCACCTCCAGACATTAGAAACATTGTTGACAAGACTGCACAGTTTGTTGCAAAAAATGGTCCTGAATTTGAGAAAAGAATCATTGCAAATAATGCTGGCAATGCGAAGTTCAATTTCTTGAATGGTTCGGATCCCTACCATGCATACTACCAACACCGCTTGGAGATAAACAACCCACAGTTCCATTTTTTGAAGCCAACCCACAGTATGTTCATGTTTTTTACTGCACTGGCAGATGCGTATTCCAAAGTCTTGATGCCTCCAAAAGGGTTGACCGAGAAGTTGAGGAAGAGTGTTACTGATATGACTACTGTGCTTGAGCGGTGCTTGCATAGGCTGGAGTGGGAACGCTCACAGGAGCAGGCAAGGCAGAAAGCTGAGGATGAGATTGAGCAAGAACGGATGCAGATGGCTATGATTGATTGGCATGATTTTGTTGTGGTTGAGACAATAGATTTTGCAGATGATGAAGATGAGGACTTACCCCCTCCAATGACTCTAGATGAGATCTCCAGAAACATAGTGGGGCTTGCTCGAACCCGTCCTGACATTTTTGGTACGACAGAGGAAGAAGTCTCCAATGCTGTAAAGGCAGAGATTGAGAAGAAGAAAGAGGATCAACCCAAGCAGGTTATATGGGATGGTCACACTGGAAGTATTGGACGCACTGCAAACCAAGCCATGACTCAGAATCTGAATGGGGAGGATCTGAATGATGCTGCTAATAATGATGCTAGGACCCTCCCTGGTCCTGCTGCTCCTCCTCCTCCCAGACCTGGACAGCAACCCCTCATGTTGAATCGGCCGCCACTTCCAATGCCACCATCAATATCTGTTAATGCACCTAATATTCCTGTACCACCTCCACCTGGGTCTCAGTTCATGCCTATGCCAGAAGCTCCACCACCACTGCCTGAAGAACCTGAACCAAAGAGGCAGAGGCTTGATGATTCTCTGCTTATTCCTGAAGACCAGTTTTTGGCTCAACATCCAGGACCAGTTCGGATCACTGTATCTGTTCCCAATGTTGATGAAGGGAACCTTAAAGGGCAACTTCTGGAGATTACAGTACAGTCCTTATCTGAAACTGTCGGTAGCTTGAAGGAGAAAATTGCAGGAGAAGTTCAACTGCCAGCAAACAAACAGAAATTAAGTGGAAAAGCTGGTTTTCTAAAGGACAATTTATCACTTGCTTATTACAATGTTGCAGCAGGAGAACCACTTGCTCTTTCTCTAAGAGAACGTGGTGGTAGAAAGAGATGA | 1338 | 45.44 | MLGKNKVNSAPASVATHTRTIGIIHPPPDIRNIVDKTAQFVAKNGPEFEKRIIANNAGNAKFNFLNGSDPYHAYYQHRLEINNPQFHFLKPTHSMFMFFTALADAYSKVLMPPKGLTEKLRKSVTDMTTVLERCLHRLEWERSQEQARQKAEDEIEQERMQMAMIDWHDFVVVETIDFADDEDEDLPPPMTLDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKKEDQPKQVIWDGHTGSIGRTANQAMTQNLNGEDLNDAANNDARTLPGPAAPPPPRPGQQPLMLNRPPLPMPPSISVNAPNIPVPPPPGSQFMPMPEAPPPLPEEPEPKRQRLDDSLLIPEDQFLAQHPGPVRITVSVPNVDEGNLKGQLLEITVQSLSETVGSLKEKIAGEVQLPANKQKLSGKAGFLKDNLSLAYYNVAAGEPLALSLRERGGRKR* | 446 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 1742012 | 1746059 | + | Vvi1g177 | Vvi1g177 | 769377 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g177 | 445 | Pfam | Ubiquitin family | 373 | 439 | IPR000626 | GO:0005515 | |
| Vvi1g177 | 445 | PANTHER | SPLICING FACTOR 3A SUBUNIT 1-RELATED | 5 | 79 | - | - | |
| Vvi1g177 | 445 | PANTHER | SPLICING FACTOR 3A SUBUNIT 1-RELATED | 284 | 323 | - | - | |
| Vvi1g177 | 445 | PANTHER | SPLICING FACTOR 3A SUBUNIT 1-RELATED | 80 | 195 | - | - | |
| Vvi1g177 | 445 | PANTHER | SPLICING FACTOR 3A SUBUNIT 1-RELATED | 193 | 285 | - | - | |
| Vvi1g177 | 445 | PANTHER | SPLICING FACTOR 3A SUBUNIT 1-RELATED | 321 | 445 | - | - | |
| Vvi1g177 | 445 | Pfam | Surp module | 31 | 80 | IPR000061 | GO:0003723|GO:0006396 | |
| Vvi1g177 | 445 | Gene3D | Surp module | 80 | 108 | IPR035967 | GO:0003723|GO:0006396 | |
| Vvi1g177 | 445 | Gene3D | Surp module | 17 | 79 | IPR035967 | GO:0003723|GO:0006396 | |
| Vvi1g177 | 445 | PANTHER | SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED | 5 | 79 | IPR045146 | GO:0003723|GO:0045292 | |
| Vvi1g177 | 445 | PANTHER | SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED | 80 | 195 | IPR045146 | GO:0003723|GO:0045292 | |
| Vvi1g177 | 445 | PANTHER | SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED | 321 | 445 | IPR045146 | GO:0003723|GO:0045292 | |
| Vvi1g177 | 445 | PANTHER | SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED | 193 | 285 | IPR045146 | GO:0003723|GO:0045292 | |
| Vvi1g177 | 445 | PANTHER | SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED | 284 | 323 | IPR045146 | GO:0003723|GO:0045292 | |
| Vvi1g177 | 445 | SUPERFAMILY | Surp module (SWAP domain) | 13 | 80 | IPR035967 | GO:0003723|GO:0006396 | |
| Vvi1g177 | 445 | SUPERFAMILY | Surp module (SWAP domain) | 80 | 114 | IPR035967 | GO:0003723|GO:0006396 | |
| Vvi1g177 | 445 | MobiDBLite | consensus disorder prediction | 259 | 337 | - | - | |
| Vvi1g177 | 445 | CDD | Ubl_SF3a120 | 358 | 438 | IPR035563 | - | |
| Vvi1g177 | 445 | ProSiteProfiles | Ubiquitin domain profile. | 386 | 442 | IPR000626 | GO:0005515 | |
| Vvi1g177 | 445 | Gene3D | - | 334 | 444 | - | - | |
| Vvi1g177 | 445 | ProSiteProfiles | SURP motif repeat profile. | 33 | 75 | IPR000061 | GO:0003723|GO:0006396 | |
| Vvi1g177 | 445 | MobiDBLite | consensus disorder prediction | 274 | 329 | - | - | |
| Vvi1g177 | 445 | SMART | surpneu2 | 31 | 84 | IPR000061 | GO:0003723|GO:0006396 | |
| Vvi1g177 | 445 | Pfam | Pre-mRNA splicing factor PRP21 like protein | 124 | 245 | IPR022030 | - | |
| Vvi1g177 | 445 | SMART | ubq_7 | 366 | 438 | IPR000626 | GO:0005515 | |
| Vvi1g177 | 445 | Coils | Coil | 141 | 161 | - | - | |
| Vvi1g177 | 445 | SUPERFAMILY | Ubiquitin-like | 339 | 443 | IPR029071 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi1g177 | K12825 | SF3A1, SAP114; splicing factor 3A subunit 1 | - | cpap:110811241 | 408.683 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi1g177 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Bhi12g01461 | . | . | . | Hepe03g0389 | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0003182 | 2 | 4 | 2 | 1 | 2 | 2 | 1 | 2 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 2 | 1 | 1 | 1 | 48 |