Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g179 ATGATTATTTATAATAAATCTTCAGACAGCAACTTCACCCCTCTTCCCTCTCATGGCATCGCCCGGAACTTCGTTTCCCGGCGACTCCTCTTCTTGCCTGAGATCCAAGTGATGGAGGTTCTTGTGGCTCTCATTGTGTTTGTGGCTATACATTCCCTAAGGCAAAGGAAGCGCCATGGCCTGCCGGTTTGGCCTTTTCTTGGGATGTTGCCTTCTCTTGTTGGGGGTCTCCGGACCGACATGTATGAATGGATTTCCGGCGTTCTTTGCCGTCGGAATGGGACGTTTGTGTTTAAGGGTCCTTGGTTTAGCAGCCTCAACTGTGTGGTCACTTCGGATCCTCGCAACATAGAGCATCTCCTCAAGGGTAAATTCTCTAACTTCCCCAAAGGAGCCTACTTTAGAAACACGGTCAGAGACCTGCTCGGGGACGGCATATTTAGCGCCGACGATGAGACCTGGCAGCGCCAGAGGAAGACGGCAAGCATTGAGTTCCACTCGGCGAAGTTCCGAAAACTCACCATTGAGTCGCTGTTGGTGCTGGTCCACTCCAGACTCCTCCCAGTGCTTGAAGATTCAGTCAAAAACTCAGCCTCTATCGACCTCCAAGACGTGCTCTTGAGGCTCACCTTCGACAATGTCTGTATGATAGCATTTGGCGTCGACCCCGGGTGTCTCCGCCTAGGCCTACCGGAAATTCCATTTGCTCGAGCATTCGAGGACGCCACAGAAGCCACGATATCGATAATGGGGGTCGATAAATTTGCAAATGAAGTGATCACAACAAGGAAGAAGGAGCTTTCGTTACAGTGTGACGACAAGAACCAGAGGTCCGATCTGTTGTCAATCTTCATGGGGTTGAAGGATGAAAATGGACAGCCATTTTCGGACAAATTTTTGAGGGATATATGCGTGAACTTCATACTTGCCGGTAGAGACACTTCCTCGGTGGCGCTGAGTTGGTTTTTCTGGCTCCTTGATCGGAATCCGGCGGTGGAGGAGAGGATCATGGCGGAGATATGCAGGATGGTGGGTGAAAGGAAAGGTGAAGAAGAGGGAGATGGTTTGATATTCAAGGCTGAGGAGGTGAAGAAAATGGAGTATCTGCAAGCTGCTCTATCAGAGGCACTCAGGTTGTATCCATCAGTGCCTGTGGATCACAAAGAGGTGATTGAAGACGATGTATTTCCAGATGGGACTGTGTTAAAGAAAGGAACCAAAGTGGTGTATGCCATTTATGCCATGGGAAGAATGGAGGGGATATGGGGAAAGGATTGCAGGGAGTTCAAGCCCGAGAGGTGGCTCCGAGACGGCCGGTTCATGAGCGAGTCAGCCTACAAGTTCACCGCCTTCAATGGCGGACCTCGGCTTTGCCTAGGGAAAGATTTTGCTTACTATCAGATGAAATTCGCTGCTGCGTCTATAATATACCGTTACCATGTCAAGGTGGTGGAAAATCATCCAGTTGAGCCGAAGCTTGCATTGACAATGTACATGAAGCATGGGTTGAAGGTGAATCTGATCCGGCGCCATGAGTCTGAGCTCCAGAAGTACCTGAAAATCAGAAACTAA 1572 49.62 MIIYNKSSDSNFTPLPSHGIARNFVSRRLLFLPEIQVMEVLVALIVFVAIHSLRQRKRHGLPVWPFLGMLPSLVGGLRTDMYEWISGVLCRRNGTFVFKGPWFSSLNCVVTSDPRNIEHLLKGKFSNFPKGAYFRNTVRDLLGDGIFSADDETWQRQRKTASIEFHSAKFRKLTIESLLVLVHSRLLPVLEDSVKNSASIDLQDVLLRLTFDNVCMIAFGVDPGCLRLGLPEIPFARAFEDATEATISIMGVDKFANEVITTRKKELSLQCDDKNQRSDLLSIFMGLKDENGQPFSDKFLRDICVNFILAGRDTSSVALSWFFWLLDRNPAVEERIMAEICRMVGERKGEEEGDGLIFKAEEVKKMEYLQAALSEALRLYPSVPVDHKEVIEDDVFPDGTVLKKGTKVVYAIYAMGRMEGIWGKDCREFKPERWLRDGRFMSESAYKFTAFNGGPRLCLGKDFAYYQMKFAAASIIYRYHVKVVENHPVEPKLALTMYMKHGLKVNLIRRHESELQKYLKIRN* 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1747951 1751082 + Vvi1g179 Vvi1g179 769379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g179 523 Pfam Cytochrome P450 250 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g179 523 Pfam Cytochrome P450 102 225 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g179 523 PANTHER CYTOCHROME P450 248 512 - -
Vvi1g179 523 PANTHER CYTOCHROME P450 25 247 - -
Vvi1g179 523 PANTHER CYTOCHROME P450 86B1-LIKE 248 512 - -
Vvi1g179 523 PANTHER CYTOCHROME P450 86B1-LIKE 25 247 - -
Vvi1g179 523 Gene3D Cytochrome P450 46 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g179 523 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g179 523 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g179 523 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g179 523 PRINTS P450 superfamily signature 458 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g179 523 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g179 523 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g179 523 PRINTS E-class P450 group I signature 370 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g179 523 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g179 523 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g179 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
Vvi1g179 523 SUPERFAMILY Cytochrome P450 54 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g179 K15402 - vvi:100254406 1023.85