Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g184 ATGGTGATAGAACACTCCTCAAGAGGGGAGAGAGCCTACGACATCTTCTCTCGCCTTCTCAAAGAGCGAATCGTGTGTATCAACGGTCCGATCTCCGACGATACTGCCCACGTCGTGGTCGCTCAACTGCTCTTCCTTGAGTCCGAGAACCCTTCTAAACCTATCCACATGTATCTCAACTCTCCCGGCGGCGCTGTCAGCGCAGGTCTTGCTATTTATGATACAATGCAGTACATTAGGTCGCCAGTTAATACCATTTGTTTGGGTCAAGCTGCATCAATGGGTTCCCTTCTATTGGCTGCGGGTGCCAAGGGTGAGAGACGGGCACTCCCAAATGCCACAATTATGATTCACCAGCCTTCAGGTGGGTACAGTGGGCAGGCAAAGGATATGACTATTCACACAAAACAGATTATTCGGGTTTGGGATTCGCTGAATGCATTGTATGCAAAGCATACTGGACAGTCATTAGATATTATTCAAAAGAATATGGATAGGGATTATTTTATGACCCCAGAAGAGGCAAAGGAGTTTGGGATAATTGATGAGGTTATTGATCAGAGACCAATGGCTTTAGTGACTGATGCAGTTGGGAATGAAGGCAAAGATAAAGGCTCTAATAAGGATTGA 630 46.19 MVIEHSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGAVSAGLAIYDTMQYIRSPVNTICLGQAASMGSLLLAAGAKGERRALPNATIMIHQPSGGYSGQAKDMTIHTKQIIRVWDSLNALYAKHTGQSLDIIQKNMDRDYFMTPEEAKEFGIIDEVIDQRPMALVTDAVGNEGKDKGSNKD* 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1779061 1780886 + Vvi1g184 Vvi1g184 769384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g184 209 SUPERFAMILY ClpP/crotonase 6 189 IPR029045 -
Vvi1g184 209 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1 206 IPR023562 -
Vvi1g184 209 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 1 188 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi1g184 209 ProSitePatterns Endopeptidase Clp serine active site. 85 96 IPR018215 -
Vvi1g184 209 CDD S14_ClpP_2 14 184 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi1g184 209 Pfam Clp protease 8 187 IPR023562 -
Vvi1g184 209 PRINTS Clp protease catalytic subunit P signature 14 29 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi1g184 209 PRINTS Clp protease catalytic subunit P signature 54 74 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi1g184 209 PRINTS Clp protease catalytic subunit P signature 85 102 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi1g184 209 PRINTS Clp protease catalytic subunit P signature 106 125 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi1g184 209 PRINTS Clp protease catalytic subunit P signature 163 182 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi1g184 209 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1 206 - -
Vvi1g184 209 ProSitePatterns Endopeptidase Clp histidine active site. 107 120 IPR033135 -
Vvi1g184 209 Gene3D - 1 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g184 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - vvi:100266180 414.461
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g184 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003966 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 2 1 1 1 1 1 44