Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g185 ATGCAGAAGCATATAGACTGTTCTCAAATCCAGCCTTATAGATGCAATGGTAAGAAAGTTTTAGCCGTAAACCCTCTTCCGCACTCTGGACGGGAACTGAATTCTGGTGAAATGTGCAAAGTTTGCCATCGGATCATATTTAAACCAAGCATCTATACCTACTGCTCTATCTCATGCAAGGTCGCAGCAGTTTCTACAAATCTGACCAGTTCAGATCCTCCCTATCTTGCCCCAAAAAAGCCAAAAAAGAAGCCCCCACCAAAGCCAAGTGTGAATAAGACACAGAGTCCCCCGAAGAGGGTGAATAAGAGAAAAGGGGTGCCTAGCAGAGCACCTTTCTTTTAA 345 44.35 MQKHIDCSQIQPYRCNGKKVLAVNPLPHSGRELNSGEMCKVCHRIIFKPSIYTYCSISCKVAAVSTNLTSSDPPYLAPKKPKKKPPPKPSVNKTQSPPKRVNKRKGVPSRAPFF* 115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1785519 1791297 - Vvi1g185 Vvi1g185 769385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g185 114 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 1 114 - -
Vvi1g185 114 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 1 114 - -
Vvi1g185 114 Pfam PLATZ transcription factor 1 61 IPR006734 -
Vvi1g185 114 MobiDBLite consensus disorder prediction 68 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g185 - - - vri:117904931 214.542
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g185 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14489 PF04640 PLATZ 4.20E-14 No_clan Vvi TF