Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g186 ATGGCTCCGGGGCGTAAAAGGGGAGCGAACAAAGCCAAGGCTAAGAGTGAGTTGCGCTTGGGCGATCTCGTTCTGGCAAAGGTCAAGGGCTTCCCAGCGTGGCCCGCCAAGATTGGCAAGCCTGAAGATTGGGATCGAACTCCTGATCCTAAGAAATATTTTGTTCAATTCTTTGGAACTGAGGAAATAGCTTTTGTTGCCCCTGGAGATATTGAGGCATTTACTAGTGAGGTAAAAAATAAATTGTCGGCTAGGTGTCGAGGTAAAACAGTTAAATTCTTCGCCCAAGCAGTGAAGGAAATATGTGATGCTTATGAAGAGTTGCAGCAAAAAAACACAAGTGCTCATGCAAATGATAATTTATCTCCAGCTATATTTTCTGAGAAAAAGAATAAAGCATCAAATGGTGCACGAACACCAAAGGAGACAGAATCAACATCCAGTCCAGATAAACCTTTCTATGTTAAGGAAGAAATCCCTAATAATAGTAATGAAGAAGATATTATTTGCACTGGACGCACACAGGTTGCAACTCCTATGAAAGGTTCGAACTCTTGTCATGACAATGTTGAAGGTGGCTCCTCTAGTTGTTGGGATGATGATGGAACGCAAAGCAAAATTGCCTCTGGTGGCAGCATGAAAGAATCATCTCCGGATACTCTGAAATCTGATTCAGATATCACGAGTGGGAAGAGAGCACTGAAAGCTAAAAAGCAATTAAAGGTAACTGTTGACCGACAGAAGGATGCTATGGCCAATAATAAGGCACAGCCAAAGGGTGATCTTTCTGGTGGGAAAAAGAGGGCCCAGCTTGGACATGGAAAGCATAAGTTGGTTGATGATGAAATTTCACATTCTGTGAAAAGGTCAAAGTGTGTGGATCCGGTGGATGATGCCACCAAGAAATCACACATCAAGAGCATAAAGAATGATTCTCTGAGTTTTACTGTTGATGACAAGACTGTCAAGCATACAGAAATAAAAAAATCTGTTTCATGTCTGAAAGTAGACAACTCCATGGCATCAGAAGCAGAGACTGGTACTGTTGGTTCAGATGTTCCTGGTGATGAAGATGTTCTACCCCTTTCAAAACGCCGTCGCCGGGCGTTGGAAGCTATGTCTGATTCTGCTACTCTGACTCCTGAGGTCAAAATAGAGAAAAATTCTGTTGTGCTTAAAAATGATGCGTTGCATTCAAAAAGTGCCAAACCTCTGCATACCCAATTGAAGAGAAAAAGGAGAACAATTTGTCGATTTGAGGATGATGATGACGAAGAGCCCAAAACTCCAGTGCATGGGCCGTCCAGAAATGAAAGCCCATCGAAGGAATGTTCACCCAGACTACAGCAAACCGTAGAGAAGAGGCCTAAAAAGACAATGGCTGCACCTATCTCCCATAGTCCTCGGAAATTAGAATCTGAGAAGTTATCTTCAAAGGAGGCTAAACAAATCTTGAGTCCCCCTAAAAAGTCTCCTCGTTCAGCTTCTGCTACCAAACCGATGTTAGAACAACATAAAGCTGTCAAATCCGCAGTTAAGGTATCCAGTAGTGGTACTTTAGTAAAGGTTCAGTCTGGGTCTGCTAAGGCTTTGAGTCTGCTTGCTGATAGCTTAACTGCTCAAAATCAAGTGGCAATTCAGAGAAATAAGCCAATGTCTAAAAATCTGATGGAAAATAATTCTTTGCTTGGAGAAAGACTAGAAGCTGGTAGGAATGATAAAACTAGTTCCTTGATTGATCCCAAGATAGCGGATTCTGTTCTGTCTATGAAGCACCTTATTGCAGCTGCTCAGGCCAAAAGGAGACAAGCACACTCACAAAATATTTCTCATGGAAATCCCAATACCGCTTTTGTATCCATTATTGATGTCCAGGGAGGGAGTCCTAGTCCTGTTTCTGCAGTTCCACCTTTTCCTTCTGGCACCAGCAGTGTAATGCAAGCAGATATGCAGGGATTTTACCCTCATACTACAATGGCTTCTCCATCTGCTCATAGTCGTCAGTTTGCATCACAAAGTCAACTCGATATTGAAGACTCTGAGGACAGAAGAGTCGGTTCAGGACCACGGGCAGCTGGTGGATCATTGAGTGGTGGTACTGAGGCAGCTGTTGCTCGTGATGCGTTTGAAGGAATGATAGAGACATTGTCAAGGACAAAAGAAAGTATTGGACGTGCAACCCGTCTTGCAATTGATTGTGCTAAGTATGGCATTGCCAATGAGGTTGTCGAACTTCTCATCCGAAAGTTGGAAAGTGAGCCTAGTTTTCATCGGAGGGTGGATCTGTTTTTTCTTGTGGATTCTATCACCCAATGCTCACATAGCCAAAAAGGAATTGCAGGAGCTTCTTATATTCCTACAGTCCAAGCTGCATTGCCGCGTCTTTTAGGCGCTGCTGCTCCATCTGGAGCTGGTGCTCGTGAAAATCGCCGTCAATGTCTGAAGGTTTTGCGGCTATGGCTTGAGAGAAAAATATTACCTGAATCTCTGCTTCGGCGCTACATGGATGACATTGGAGTTTCAAATGATGACACAACTTCTGGTTTTTTCCTTAGACGCCCTTCTCGATCTGAGCGGGCTGTAGATGATCCAATTAGAGAAATGGAAGGCATGTTTGTTGATGAGTATGGAAGCAATGCTACATTTCAGTTGCCTGGCCTTTTGTCTTCTCATGTATTTGAAGATGAAGATGAAGAAGATCTTCCAAGTGGTTTTTCTAAAGAAGCTGCTGGTGCATCTCCAGTAAAACCCACTCATGCTTCAGGAGATCCAGAAACTGTAACTCCAAATGACAGGCGCCACCACATCTTAGAGGATGTGGATGGTGAGCTTGAAATGGAAGATGTTTCCGGACACCTGAAGGATGAGAGACCTCTGTTCAGAAATGGTTCTTTCGAAATGGATTCACACCAGGACTCTGACAGAATTTCAGAACTAGCTTCAAACAATTCGAACGAGTTGCCCCCACTACCAGAGGCCAGCACCTACCTACAGTCTTCACCCCAGTTAGCATATCAACCACCTGTGCCTCATGAATATTGCAGTGTTGTAAGTGGAAATCAACTTGCCCCAATGGCTGGAAATACATCTCATGGAGGTCATATTGATACTGCTGTAAAAAGTGAAATGTTTCCACAGCAGTCACCTTGCTTTGCACCAACAGGTGTCTGCAATTCAAGAGAACCTTCTGGGTTTAATTCTTCAAGACCATTGGAATATGGGCATAATGACATGTATTTGAACCACCAAGCTTCTCAGCCTAGCCAGCAATTTCAGCCAGGTAATACACCTTTTTCACAAAGACCTTTACATCCAGCTCCATCTCCACAAACCCAACCTAGTCATTTTTCCTACACAAATCCCAACATCCAGCAACATCAGCAGCACCCATACTCCCACCCATACCCATTGCCACCGCCTCCTGATACCCGGAGGCGATTTGGTGCTGATGAACAGTGGAGGATGTCCTCAAGTGAACTTAACACAGATAGTCAGCGTGGTTTGTGGATGAGTGGAGGGAGAACTCCATCATGTTCAGGACCACCTTTTGTCCAGGAAGGTTATTTTCGGCCGCCCCTCGAAAGGCCACCTGCAAATAATATGGGTTTTCATTCTACCCCAAACGCGCTACCAGCTGGAGCTCCCATTCCAGTTCATGGTGTTTCTCAGATGTTGCCATGTAGACCAGATGTTTCTGCCCTTAATTGTTGGAGGCCAGCTTAG 3723 44.21 MAPGRKRGANKAKAKSELRLGDLVLAKVKGFPAWPAKIGKPEDWDRTPDPKKYFVQFFGTEEIAFVAPGDIEAFTSEVKNKLSARCRGKTVKFFAQAVKEICDAYEELQQKNTSAHANDNLSPAIFSEKKNKASNGARTPKETESTSSPDKPFYVKEEIPNNSNEEDIICTGRTQVATPMKGSNSCHDNVEGGSSSCWDDDGTQSKIASGGSMKESSPDTLKSDSDITSGKRALKAKKQLKVTVDRQKDAMANNKAQPKGDLSGGKKRAQLGHGKHKLVDDEISHSVKRSKCVDPVDDATKKSHIKSIKNDSLSFTVDDKTVKHTEIKKSVSCLKVDNSMASEAETGTVGSDVPGDEDVLPLSKRRRRALEAMSDSATLTPEVKIEKNSVVLKNDALHSKSAKPLHTQLKRKRRTICRFEDDDDEEPKTPVHGPSRNESPSKECSPRLQQTVEKRPKKTMAAPISHSPRKLESEKLSSKEAKQILSPPKKSPRSASATKPMLEQHKAVKSAVKVSSSGTLVKVQSGSAKALSLLADSLTAQNQVAIQRNKPMSKNLMENNSLLGERLEAGRNDKTSSLIDPKIADSVLSMKHLIAAAQAKRRQAHSQNISHGNPNTAFVSIIDVQGGSPSPVSAVPPFPSGTSSVMQADMQGFYPHTTMASPSAHSRQFASQSQLDIEDSEDRRVGSGPRAAGGSLSGGTEAAVARDAFEGMIETLSRTKESIGRATRLAIDCAKYGIANEVVELLIRKLESEPSFHRRVDLFFLVDSITQCSHSQKGIAGASYIPTVQAALPRLLGAAAPSGAGARENRRQCLKVLRLWLERKILPESLLRRYMDDIGVSNDDTTSGFFLRRPSRSERAVDDPIREMEGMFVDEYGSNATFQLPGLLSSHVFEDEDEEDLPSGFSKEAAGASPVKPTHASGDPETVTPNDRRHHILEDVDGELEMEDVSGHLKDERPLFRNGSFEMDSHQDSDRISELASNNSNELPPLPEASTYLQSSPQLAYQPPVPHEYCSVVSGNQLAPMAGNTSHGGHIDTAVKSEMFPQQSPCFAPTGVCNSREPSGFNSSRPLEYGHNDMYLNHQASQPSQQFQPGNTPFSQRPLHPAPSPQTQPSHFSYTNPNIQQHQQHPYSHPYPLPPPPDTRRRFGADEQWRMSSSELNTDSQRGLWMSGGRTPSCSGPPFVQEGYFRPPLERPPANNMGFHSTPNALPAGAPIPVHGVSQMLPCRPDVSALNCWRPA* 1241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1797846 1814503 + Vvi1g186 Vvi1g186 769386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g186 1240 ProSiteProfiles CID domain profile. 701 842 IPR006569 -
Vvi1g186 1240 PANTHER PROTEIN HUA2-LIKE 1 1 189 - -
Vvi1g186 1240 PANTHER PROTEIN HUA2-LIKE 1 146 439 - -
Vvi1g186 1240 PANTHER PROTEIN HUA2-LIKE 1 438 993 - -
Vvi1g186 1240 PANTHER PROTEIN HUA2-LIKE 1 996 1240 - -
Vvi1g186 1240 SUPERFAMILY Tudor/PWWP/MBT 16 122 - -
Vvi1g186 1240 MobiDBLite consensus disorder prediction 343 362 - -
Vvi1g186 1240 MobiDBLite consensus disorder prediction 114 159 - -
Vvi1g186 1240 SMART PWWP_4 18 75 IPR000313 -
Vvi1g186 1240 MobiDBLite consensus disorder prediction 176 218 - -
Vvi1g186 1240 MobiDBLite consensus disorder prediction 1154 1172 - -
Vvi1g186 1240 MobiDBLite consensus disorder prediction 414 432 - -
Vvi1g186 1240 MobiDBLite consensus disorder prediction 926 975 - -
Vvi1g186 1240 MobiDBLite consensus disorder prediction 976 999 - -
Vvi1g186 1240 MobiDBLite consensus disorder prediction 1110 1131 - -
Vvi1g186 1240 MobiDBLite consensus disorder prediction 1086 1206 - -
Vvi1g186 1240 CDD HDGF_related 17 104 IPR035496 -
Vvi1g186 1240 Pfam PWWP domain 21 105 IPR000313 -
Vvi1g186 1240 MobiDBLite consensus disorder prediction 176 286 - -
Vvi1g186 1240 MobiDBLite consensus disorder prediction 655 675 - -
Vvi1g186 1240 MobiDBLite consensus disorder prediction 402 502 - -
Vvi1g186 1240 MobiDBLite consensus disorder prediction 219 245 - -
Vvi1g186 1240 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 996 1240 - -
Vvi1g186 1240 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 146 439 - -
Vvi1g186 1240 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 438 993 - -
Vvi1g186 1240 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 1 189 - -
Vvi1g186 1240 MobiDBLite consensus disorder prediction 655 699 - -
Vvi1g186 1240 ProSiteProfiles PWWP domain profile. 20 77 IPR000313 -
Vvi1g186 1240 Gene3D - 700 845 IPR008942 -
Vvi1g186 1240 MobiDBLite consensus disorder prediction 894 999 - -
Vvi1g186 1240 Pfam CID domain 708 832 IPR006569 -
Vvi1g186 1240 MobiDBLite consensus disorder prediction 114 150 - -
Vvi1g186 1240 Gene3D - 7 118 - -
Vvi1g186 1240 SMART 558neu5 708 839 IPR006569 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g186 - - - vvi:100255898 1459.51
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g186 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005418 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 40