Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g187 ATGGAAAGAGAGGAACGTCGTGGCAGTTATTATAATTATGGTGATTACGATTATGAGAATGGGAATTGCGGTCGCTACCGCGTGGAGAGTGTGATGGTGGAGCGCGACAGGGACAATCAGAGTCCGGAGATGTCTTCTTCTTGGAAGATTTTGCCGGTTTCGTCGTGTCCTTCGTCTTCGTCTGGTCTCGGTGTGGGTTCGATCGAGCATCAGGTTTCGAAGATGGATACGCTTGCTGGGATTGCGATCAAGTACGGTGTGGAGGTGGCTGACATTAAAAGGATGAATGGCCTGGTCACCGATCTTCAAATGTTTGCTCTCAGGACACTACAAATACCATTACCGGGAAGGCATCCTCCATCTCCCTGTTTGCTAAATAGTTCTGAGACTCCCCAACGGAACTCTGACTGGACCCCAACAGACAGTGTGCACCGCAACCTTTTTGAAACATTCCAGTCACTGAGAGTGAAATCATCTTCCCAGCGGCCGGTATCCCCAGCTATGAGCACTTTACAAGGTTATTACAGGCTGAAGCCAGAAGATCAGCGAAATGCACCCAAAGGCTTTGAAATGGCAGTCTACAGAAAAGAAAGTGCCCATTATTTAGAAGATGGGCCATTCTCCAAACAGTCATCAATTTCTAACCCACTTCTGAGCCGTGTTCGGAAATGTAGAAGCTTAGCTAACGGTTTCATGCCAGAGAATGGCGAAGCAGCTGACGACATGACAATTTTAGAAGCAAAGGAAGGTGACTATAGATGGAATGAGAAATTGATCAGAAGGCGTCAGAAATCTGAAACAGACTTTTCTTGCAGCCCCGAAATGCCGTTGAAGGAGGATAACAGAAGTGGTGGTGGTGGTGGTGGATTTTCAGCAATAACAGGAAAGGGTTTGGCCCTGAGAACCAAAGCAGTGAATCGAACTGCAACTGATGCAGATGCAAGTTTAATGAACCCTATTCCGGTAGGTCTGGGGGATTCTATTGTGACAGATAGTTTTGCTGGAGTAAGGAAGTCATCAAGCACATCAAATTTGCAGGATCAGGACAGTGCTATCTTTCCGTCCATCTGGCCAACATCAATGTGGAATTTGAAGCCTGATCTACAAGCCCTTTCAACTGCAGCCATTACAAGACCAATCTTTGATGGCTTGCCTAAACCAATAACTGGACGAAAAAACAAAGCCGCTCTTGATTAG 1197 46.45 MEREERRGSYYNYGDYDYENGNCGRYRVESVMVERDRDNQSPEMSSSWKILPVSSCPSSSSGLGVGSIEHQVSKMDTLAGIAIKYGVEVADIKRMNGLVTDLQMFALRTLQIPLPGRHPPSPCLLNSSETPQRNSDWTPTDSVHRNLFETFQSLRVKSSSQRPVSPAMSTLQGYYRLKPEDQRNAPKGFEMAVYRKESAHYLEDGPFSKQSSISNPLLSRVRKCRSLANGFMPENGEAADDMTILEAKEGDYRWNEKLIRRRQKSETDFSCSPEMPLKEDNRSGGGGGGFSAITGKGLALRTKAVNRTATDADASLMNPIPVGLGDSIVTDSFAGVRKSSSTSNLQDQDSAIFPSIWPTSMWNLKPDLQALSTAAITRPIFDGLPKPITGRKNKAALD* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1819805 1823800 - Vvi1g187 Vvi1g187 769387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g187 398 PANTHER PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN 49 398 - -
Vvi1g187 398 PANTHER LOC443603 PROTEIN-RELATED 49 398 IPR045030 -
Vvi1g187 398 MobiDBLite consensus disorder prediction 265 289 - -
Vvi1g187 398 Pfam LysM domain 70 113 IPR018392 -
Vvi1g187 398 CDD LysM 68 112 IPR018392 -
Vvi1g187 398 ProSiteProfiles LysM domain profile. 68 112 IPR018392 -
Vvi1g187 398 Gene3D LysM domain 54 119 IPR036779 -
Vvi1g187 398 SMART LysM_2 69 113 IPR018392 -
Vvi1g187 398 SUPERFAMILY LysM domain 69 113 IPR036779 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g187 - - - vvi:100250730 766.533
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g187 Vvi17g403 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004465 3 1 3 2 0 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 42