Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g19 ATGCCCACTCTCACAAAGCTCTTCTCCATGCAAGAGGCCTCTCTCCACAACTCCAAGGACGACTGTTGGGTCGTCATCGATGGCAAGGTATATGATGTGACAACTTATTTGGATGAACACCCTGGTGGAGATGATGTGATCCTTGCTACAACTGGGAAAGATGCCACCGATGATTTTGAGGATGCTGGGCATAGCAATGATGCAAGGGAGCTTATGAAGAGCTTTTGTGTTGGGGAGCTTGATATGTCTTCCCCAGCTATTCCAGAACTTAAAATCTCTGACAAGAAACAACAAACAGATGTTGCTCAGAAGCTCTTGAACTTGACAAAACAATACTGGGCTGTTTCTGTAGCCATAGTTGGCATCTCTGTGGTGGCTGGCTTCTTGTTTATGCGGAAGAAGTAA 405 45.68 MPTLTKLFSMQEASLHNSKDDCWVVIDGKVYDVTTYLDEHPGGDDVILATTGKDATDDFEDAGHSNDARELMKSFCVGELDMSSPAIPELKISDKKQQTDVAQKLLNLTKQYWAVSVAIVGISVVAGFLFMRKK* 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 297104 301979 + Vvi1g19 Vvi1g19 769219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g19 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 87 IPR036400 -
Vvi1g19 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Vvi1g19 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Vvi1g19 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Vvi1g19 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Vvi1g19 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Vvi1g19 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Vvi1g19 134 Gene3D - 3 85 IPR036400 -
Vvi1g19 134 PANTHER CYTOCHROME B5 ISOFORM A 3 133 - -
Vvi1g19 134 PANTHER CYTOCHROME B5 3 133 - -
Vvi1g19 134 SMART Cyt_b5_2 8 81 IPR001199 -
Vvi1g19 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 10 80 IPR001199 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g19 K23490 - vvi:100250986 266.544