Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g19 ATGCCCACTCTCACAAAGCTCTTCTCCATGCAAGAGGCCTCTCTCCACAACTCCAAGGACGACTGTTGGGTCGTCATCGATGGCAAGGTATATGATGTGACAACTTATTTGGATGAACACCCTGGTGGAGATGATGTGATCCTTGCTACAACTGGGAAAGATGCCACCGATGATTTTGAGGATGCTGGGCATAGCAATGATGCAAGGGAGCTTATGAAGAGCTTTTGTGTTGGGGAGCTTGATATGTCTTCCCCAGCTATTCCAGAACTTAAAATCTCTGACAAGAAACAACAAACAGATGTTGCTCAGAAGCTCTTGAACTTGACAAAACAATACTGGGCTGTTTCTGTAGCCATAGTTGGCATCTCTGTGGTGGCTGGCTTCTTGTTTATGCGGAAGAAGTAA 405 45.68 MPTLTKLFSMQEASLHNSKDDCWVVIDGKVYDVTTYLDEHPGGDDVILATTGKDATDDFEDAGHSNDARELMKSFCVGELDMSSPAIPELKISDKKQQTDVAQKLLNLTKQYWAVSVAIVGISVVAGFLFMRKK* 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 297104 301979 + Vvi1g19 Vvi1g19 769219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g19 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 87 IPR036400 -
Vvi1g19 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Vvi1g19 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Vvi1g19 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Vvi1g19 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Vvi1g19 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Vvi1g19 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Vvi1g19 134 Gene3D - 3 85 IPR036400 -
Vvi1g19 134 PANTHER CYTOCHROME B5 ISOFORM A 3 133 - -
Vvi1g19 134 PANTHER CYTOCHROME B5 3 133 - -
Vvi1g19 134 SMART Cyt_b5_2 8 81 IPR001199 -
Vvi1g19 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 10 80 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g19 K23490 CYB5; cytochrome b5 - vvi:100250986 266.544
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g19 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0897 . . Cone9ag0531 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi16g991 . 1 135 NADPH P450 reductases AT5G53560 80.0 1.2e-59 226.1
Vvi7g751 . 5 132 NADPH P450 reductases AT5G53560 64.8 3.9e-47 184.5
Vvi7g751 . 2 132 NADPH P450 reductases AT5G48810 69.9 2.5e-52 201.8
Vvi16g991 . 1 134 NADPH P450 reductases AT5G48810 60.3 8.5e-45 176.8
Vvi7g751 . 21 134 NADPH P450 reductases AT2G32720 78.9 6.0e-48 187.2
Vvi16g991 . 22 133 NADPH P450 reductases AT2G32720 65.2 3.9e-39 157.9
Vvi1g19 . 1 133 NADPH P450 reductases AT1G26340 70.1 2.1e-48 188.7
Vvi8g84 ECH 2 278 NADPH P450 reductases AT5G17770 81.0 5.0e-129 457.6
Vvi6g897 ECH 8 279 NADPH P450 reductases AT5G17770 77.2 8.2e-124 440.3
Vvi13g922 . 24 290 NADPH P450 reductases AT5G17770 68.5 1.8e-110 396.0
Vvi16g991 . 1 135 NADPH P450 reductases AT5G53560 80.0 1.2e-59 226.1
Vvi7g751 . 5 132 NADPH P450 reductases AT5G53560 64.8 3.9e-47 184.5
Vvi7g751 . 2 132 NADPH P450 reductases AT5G48810 69.9 2.5e-52 201.8
Vvi16g991 . 1 134 NADPH P450 reductases AT5G48810 60.3 8.5e-45 176.8
Vvi7g751 . 21 134 NADPH P450 reductases AT2G32720 78.9 6.0e-48 187.2
Vvi16g991 . 22 133 NADPH P450 reductases AT2G32720 65.2 3.9e-39 157.9
Vvi1g19 . 1 133 NADPH P450 reductases AT1G26340 70.1 2.1e-48 188.7
Vvi8g84 ECH 2 278 NADPH P450 reductases AT5G17770 81.0 5.0e-129 457.6
Vvi6g897 ECH 8 279 NADPH P450 reductases AT5G17770 77.2 8.2e-124 440.3
Vvi13g922 . 24 290 NADPH P450 reductases AT5G17770 68.5 1.8e-110 396.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013997 0 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 2 0 1 1 0 1 0 1 0 1 1 2 1 24