Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g192 ATGGGAAAGTCCAGCAAGAAATCGACCCCCAAAGTTGATGCAACTCCCGTTGTCACTCCACCCTCCAAACCTACCAAAAAAGGTAAGAGGCAAGCTGAAGATTCGGTAGAGAAGGTGGTGAGCGCGAAGAAGCAGAAAAAAGATAATGGGGTAGAGCAGGTCGTACAGAAGCAGAAGGTCGAAGTGAAAAAACAACAGAAGGTGGAGACGAAGAAGAAGAAGAAAGAGGAGACTAGTAGCTCAGAGGACTTGACTTCATCTGATTCTGATGAAGAGCCAAAGGCTACAACAGCCTCTAAGAAGGGAGCAATTCCGGCAAAACCACCTGCTAAAGCAACTGTTGAGGAATCTTCATCGGATGAGGAATCTTCATCTGATGAGGAGCCTGATTCTAAAGTTGCTGTTCCTTCAAAGAAAAAACCTATATCTGCTTCTAAGAATGGCACTGCCGCTGGCCCAGTGGCTGCTGCAAAGAAGGTGAGTGACAGTTCAAGCTCTGACAGCAGTGATGATTCAGACTCGGATGAAGAAATTAAAGAAGCTAATAAGGTGAGCTCCCAACCAAAGAAATTACCAGCCACTGCCAAGGCTGCTAAGAATGGCTCTGTCGTGGCTCCCAAGAAGAAAGAAGAGTCAAGTGATAGTTCTGATTCAGATAGTAGTTCAGATGAGGAGGATGAGAAGGCTTCAAAGGTTGCTTCTCAAGCTAAGAAGTTGCCACCTTCCAGCCAAAAGAATGTTCCAGTGGCGGCTCCTAAGAAAGCTGAATCAAGTGATAGCTCTGATGAGAGTGATTCTGATGAAGAGGAACCAGCTGCTGCAAAGAATGTAGCTGCTGCAAAGAATGTAATTGCTGCAGCACCTAAAAAGAAAGTACAGTCTAGTGATAGTTCTTCTGAGACCTCTTCAGAGGAAGAAGAGGAACCACAGAAAAAACCAGCACCTAAAGAAGATAGCAGTGAAGATGATAGTTCTGATGAAAGTGATGAAGAGCCTCAAAAGAAAAAGTTGAAAGTTCCGGCTTCAGTTCCTTCTAATGCTGGAAAATCAAGCAGTAGCGAAGAGGAAAGCTCTGATTCAGAAGATGAGCCCTCAAAGATACCATTGCCAAAGAAGGCTACTCAAGTGTCAAAGAAAAGCAGCGGTCCTGAGGAGGATTCCTCAGAGGAGGATTCATCTGAGGAAGAAAGCGATGAGGAAGAGCCTTCCAAGACCCCAAAGAAGAATGGCACTGATGTGGAAATGGTAGATGCTGAAACACCTGCTAAGCAGACTGATTCAAAATCTGGGAAGAAAGCTCCCAAAACCCCTGCCACTCCTCAAGTGGAGAGCACTGGAAGCAAGACACTGTTTGTTGGCAATCTATCTTTTAGTGTTCAAAAAGAGGATGTGGAGCATTTCTTTAAAGATGCTGGTGAAGTTGTTGATGTCCGTTTCTCCTCAGATGCAGACGGGAGGTTCAAGGGCTTTGGTCATGTTGAGTTTGCTACTCCAGAAGCAGCACAGAAGGCTCTCAAAATGAATGGTAAAGACTTGTTGGGTCGTGCTGTCAGACTTGATTTGGCCCGTGAAAGGGGCGCATATACTCCATATAGCGGAAAAGAAAGCAATTCATTCCAAAAGGGAGGGAGTCAGGCACAGACGATATTTGTTCGGGGCTTTGATAAAAGTGGCGATGAGGACCAGGTTAGGAGCACCCTGGAAGAGTATTTTGGGTCTTGTGGGGATATTTCAAGGATTTCAATCCCTAAAGATTATGAATCTGGTTCTGTTAAGGGGATTGCTTACATGGACTTCACAGATGGTGACAGCTTCAACAAAGCTCTTGAACTCAATGGAACAGAACTGGGAGGTTATACCTTGAATGTTGAAGAGGCAAAGCCCAGAGTGGTGGTGGGGGCCGTTTTGGCGGTGGTGGCAGAGGACGTGGAGGTTTTAATAAACCAAACATGGGTGCTGCTGGCACAGGTAAGAAGACAACTTTCAATGATGAGTAAGGCCTTAAGGGGGGATTTTGGAGATACAGAGTGCCGCCTCCTTCTATCTTCATATAGTAATATCATTTTTGTTTGTTGA 2076 45.28 MGKSSKKSTPKVDATPVVTPPSKPTKKGKRQAEDSVEKVVSAKKQKKDNGVEQVVQKQKVEVKKQQKVETKKKKKEETSSSEDLTSSDSDEEPKATTASKKGAIPAKPPAKATVEESSSDEESSSDEEPDSKVAVPSKKKPISASKNGTAAGPVAAAKKVSDSSSSDSSDDSDSDEEIKEANKVSSQPKKLPATAKAAKNGSVVAPKKKEESSDSSDSDSSSDEEDEKASKVASQAKKLPPSSQKNVPVAAPKKAESSDSSDESDSDEEEPAAAKNVAAAKNVIAAAPKKKVQSSDSSSETSSEEEEEPQKKPAPKEDSSEDDSSDESDEEPQKKKLKVPASVPSNAGKSSSSEEESSDSEDEPSKIPLPKKATQVSKKSSGPEEDSSEEDSSEEESDEEEPSKTPKKNGTDVEMVDAETPAKQTDSKSGKKAPKTPATPQVESTGSKTLFVGNLSFSVQKEDVEHFFKDAGEVVDVRFSSDADGRFKGFGHVEFATPEAAQKALKMNGKDLLGRAVRLDLARERGAYTPYSGKESNSFQKGGSQAQTIFVRGFDKSGDEDQVRSTLEEYFGSCGDISRISIPKDYESGSVKGIAYMDFTDGDSFNKALELNGTELGGYTLNVEEAKPRVVVGAVLAVVAEDVEVLINQTWVLLAQVRRQLSMMSKALRGDFGDTECRLLLSSYSNIIFVC* 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1891401 1898953 - Vvi1g192 Vvi1g192 769392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g192 691 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 448 524 IPR000504 GO:0003723
Vvi1g192 691 CDD RRM1_NUCLs 449 525 IPR034349 -
Vvi1g192 691 SMART rrm1_1 449 520 IPR000504 GO:0003723
Vvi1g192 691 SMART rrm1_1 548 624 IPR000504 GO:0003723
Vvi1g192 691 MobiDBLite consensus disorder prediction 431 445 - -
Vvi1g192 691 SUPERFAMILY RNA-binding domain, RBD 438 538 IPR035979 GO:0003676
Vvi1g192 691 PANTHER BNAA08G02930D PROTEIN 289 626 - -
Vvi1g192 691 MobiDBLite consensus disorder prediction 400 430 - -
Vvi1g192 691 MobiDBLite consensus disorder prediction 304 319 - -
Vvi1g192 691 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 450 517 IPR000504 GO:0003723
Vvi1g192 691 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 549 621 IPR000504 GO:0003723
Vvi1g192 691 MobiDBLite consensus disorder prediction 26 97 - -
Vvi1g192 691 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 289 626 - -
Vvi1g192 691 Gene3D - 533 633 IPR012677 -
Vvi1g192 691 Gene3D - 370 532 IPR012677 -
Vvi1g192 691 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 547 628 IPR000504 GO:0003723
Vvi1g192 691 MobiDBLite consensus disorder prediction 1 445 - -
Vvi1g192 691 SUPERFAMILY RNA-binding domain, RBD 544 630 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g192 K11294 NCL, NSR1; nucleolin - vvi:100262769 925.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g192 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003780 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 2 1 1 2 1 1 45