Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g194 ATGTCTCTCCTCGCTGATCTCCAGAACATCAACCTCAGTGACTCCACGGAGAAGATTATCGCCGAATACATATGGATCGGCGGATCCGGAAATGATTTGAGGAGTAAAGCAAGGACCCTCTCCGGTCCGGTCACTGGCCCAGCGCAACTGCCGAAGTGGAACTACGATGGATCCAGCACCGGCCAGGCTCCCGGCGAAGACAGTGAAGTCATTTTATACCCTCAGGCGATCTTTAAGGATCCCTTCAGAGGAGGAGACAATATTCTGGTCATGTGCGATGCCTACACTCCAGGGGGCGAACCAATCCCGACAAACAAGAGATTCAATGCTGCCAAGATTTTTAGCCATCCTGAAGTGACCGCCGAGGAGCCTTGGTATGGCATTGAGCAAGAATATACTCTTCTTCAGAAGGACGTCAACTGGCCGCTTGGATGGCCAGTTGGCGGCTTCCCTGGCCCTCAGGGGCCATACTACTGTGGAATTGGGGCTGACAAGGCCTTTGGTCGTGACATAGTAGATGCTCACTACAAGGCATGCCTGTATGCTGGAATCAACATTTCTGGAATCAATGGAGAGGTCATGCCTGGGCAGTGGGAATTCCAAGTTGGGCCTGCAGTTGGGATCTCTGCTGGTGATGAATTATGGGTTGCCCGGTACATTCTGGAGAGGATTACAGAAATCGCTGGAGTTGTCGTTTCATTTGACCCAAAACCTATCAAGGGAGACTGGAATGGTGCTGGAGCTCACACCAACTATAGCACGAAATCCATGAGGAATACTGGTGGATATGATGTGATTAAAAAGGCAATTGAAAAGTTGGGTTTGCGCCACAAGGAGCATATTTCAGCTTATGGAGAGGGTAATGAGAGAAGATTGACTGGTCGCCATGAAACAGCTGACATCAACACTTTCTGTTGGGGTGTTGCCAACAGAGGTGCCTCTATCCGTGTTGGCCGTGACACTGAAAAGGAAGGAAAAGGTTACTTTGAAGACAGAAGACCTGCTTCCAACATGGATCCATACGTTGTCACTTCCATGATCGCCGAGACCACCATCCTCTGGAAGCCTTAG 1071 50.14 MSLLADLQNINLSDSTEKIIAEYIWIGGSGNDLRSKARTLSGPVTGPAQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGDNILVMCDAYTPGGEPIPTNKRFNAAKIFSHPEVTAEEPWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVVSFDPKPIKGDWNGAGAHTNYSTKSMRNTGGYDVIKKAIEKLGLRHKEHISAYGEGNERRLTGRHETADINTFCWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1923582 1928032 + Vvi1g194 Vvi1g194 769394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g194 356 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 106 356 IPR008146 GO:0004356|GO:0006807
Vvi1g194 356 Pfam Glutamine synthetase, catalytic domain 168 254 IPR008146 GO:0004356|GO:0006807
Vvi1g194 356 Pfam Glutamine synthetase, beta-Grasp domain 22 97 IPR008147 GO:0004356|GO:0006542|GO:0006807
Vvi1g194 356 SMART Gln_synt_C_2 103 351 IPR008146 GO:0004356|GO:0006807
Vvi1g194 356 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 19 99 IPR008147 GO:0004356|GO:0006542|GO:0006807
Vvi1g194 356 SUPERFAMILY Glutamine synthetase/guanido kinase 103 352 IPR014746 GO:0003824
Vvi1g194 356 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 104 356 - -
Vvi1g194 356 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 237 253 IPR027303 -
Vvi1g194 356 PANTHER GLUTAMINE SYNTHETASE 1 354 - -
Vvi1g194 356 PANTHER GLUTAMINE SYNTHETASE 1 354 - -
Vvi1g194 356 ProSitePatterns Glutamine synthetase signature 1. 55 72 IPR027302 -
Vvi1g194 356 Gene3D - 1 103 IPR036651 GO:0004356|GO:0006542|GO:0006807
Vvi1g194 356 SUPERFAMILY Glutamine synthetase, N-terminal domain 14 102 IPR036651 GO:0004356|GO:0006542|GO:0006807
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g194 K01915 glnA, GLUL; glutamine synthetase [EC:6.3.1.2] - vvi:100249247 736.487
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g194 Vvi14g934 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g194 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000333 5 5 3 4 4 4 2 4 4 4 4 4 7 3 4 8 4 8 7 4 4 4 2 4 4 3 4 9 5 5 136