Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g196 ATGTATGCAAGGAGACTCCTCAAGAATAGAAATCTGAAATGGGATTTTGTGTTTCAGCCATCCAAGTATTATATTACTCCGAAGCACAAAGATTACATGTTTTCCCGGTCTTTGTGCTCTAGAACTTTAGCAGGAAACTGTTCATTATGTGATAATTTGATCAGAAGATATCTTTCAGATTCATTATTGACTCAGGGTGTTGCCGCTGGAAATAGTAATGTTAGGTTGCATGGGAGTTTTAATGTATCTTTGCGGAGTAGTCAGTTAAGATTCTACAGTTCTGAAGGCGATGGAAGGAATGCCAGTGAGGATGAACATATACCTGTGAAGGATGGGGCTAACTTGGATAAGGGGAAGACTAAGCGGAAGGTTAGAGAAGCTGTGAGGCACTGTGATGAGCACATTCGGCTTGGGGAACAAGATCAAAAGGAATGGCTCAATAATGAGAAACTAGCCATTGAGAGTAGAAAGAAGGAATCACCATTCCTATCTAGACGGGAAAAGTTAAAAAATGAGTTCTTGCGGAGAGTTGTTCCATGGGAGAAAATAACTGTTTCATGGGAAACATTTCCTTATCACATTCCGGACCATACCAAAAATCTTTTGGTGGAATGTGCTGCTTCCCATCTGAAACATAAGAAGTTCACTGTGTCTTATGGTGCTCGTTTGACCTCTTCAAGTGGGAGGATACTGCTTCAAAGTGTTCCAGGTACTGAGCTATACCGAGAAAGATTAGTCAGAGCACTTGCTAGAGATTTACAAGTTCCCTTACTGGTTCTGGACAGCAGTATTCTTGCTTCTTATGATTTTGCTGAAGGTTGCTCATCAGAATGTGAATCAGATGATGATAACTTGGAATCGTGTGAAGACTGCATTTCAGAGTCTGAGATTGAGGACGAGAGTGATTCAAATGATGAGGAAGAATGGACAAGCAGTGGTGAGGTGAAGTCAGATGCTAGTGATAATGATGATGTGCAGGCTTCTGCTGAAGCTCTAAAGAAGCTTGTTCCCCACAAGCTCAAAAAATTTGAACAGAGAGTTGCTGCAGAATTGGAAATTTCCTCCGAATCCTCAACTTCTGAGGCTGTTGAATCTTCTGATAAACCTAAATGGTCACTAAAGAAAGGGGATCGAGTAAAATATGTTGGGCCTTCTATTGATATTGAAGCTGATAACAGGGTCATTTTGGGGAAGATACCAACATGTGATGGTCCAACAAATGCTTATACCATTTTCCGTGGCAGGCCTTTATCAAGTGGTCAACGTGGAGAGGTATATGAGGTGAATGGGGATCGAGTTGCTGTTATCTTGGATAGAAGCGAAAAAAAACCAAATGAAGGAGAGGAAGATGAAAAGCTTATAGACCAAGCTGAAAAACCCTCAGTTTATTGGATGCAAGTTAAGGACATTGAGTATGATCTTGATACTGAGGGAGAAGATCGGTACATTGCAATGGAGGCTTTGTGTGAGGTTTTGCATTCTACACAGCCTCTTATTGTCTATTTTCCAGACTCTTCTCAATGGTTGTTGAGGGCCGTCTCCAAGCCAAATCAGAAAGAGTTTGTTTGTAGGGTACAGGAAATGTTTGACCAATTATCAGGACCTGTTGTTTTGATATGCGGGCAGAACAAAACTGAAGCAGGGTCAAAGGAGAGGGAAAAATTTACGATGCTAGTCCCGGGTTTGGGTCGCCTTGCTAAGCTGCCTGTCCCATTGAAGCAACTTACAGAGGGACTAAAAGCAACAAAGACATCAGAAAACAATGAGATACTTAAGCTTTTCAGTAATGTTATATGTATCGATACCCCAAAGGATGAAGAACTTCTTAGAACATTCAATAAGCAGGTTGAAGAAGACCGAAGGATCATTATCTCCCGGAGCAATTTAAATGAATTGCACAAGGTTCTGGAGGAACATCAGCTGTCATGCATGGATCTGTTGCATGTAAATACTGATGGTGTGATATTGACTAAGCAAAAAGCTGAAAAGATTGTTGGCTGGGCTAAAAATCATTACTTGTCATCTTGCATGCTTCCTTCCATAAAGGGGGAAAGATTATCTGTACCTCGTGAAAGCCTTGAAATTGCAGTTTTGAGATTAAAGGTGCAGGAAGCAATATCCAGAAAGCCGTCACACAGTTTGAAGAATCTTGCCAAGGATGAATATGAGAGCAACTTTGTTTCGGCGGTTGTTCCTCCCGGTGAAATTGGTGTTAAGTTTGATGATATTGGTGCTCTTGAAGATGTGAAGAAGGCATTAAATGAACTTGTCATTCTTCCAATGAGGAGACCAGAGCTTTTCTCTCATGGAAATCTGTTGCGGCCTTGCAAAGGAATATTACTTTTTGGTCCTCCTGGAACTGGGAAAACCCTTCTTGCCAAGGCTCTTGCTACAGAAGCGGGGGCAAACTTTATCAGCGTAACTGGTTCAAATCTTACATCGAAGTGGTTTGGAGATGCTGAAAAGCTTACCAAAGCCTTGTTCTCCTTTGCTGGCAAGCTGGCACCTGTTATCATATTTGTTGATGAGGTTGACAGTTTGCTTGGTGCACGTGGTGGTGCTTTTGAGCATGAGGCAACTAGGAAAATGCGCAATGAGTTTATGGCAGCTTGGGATGGATTGAGGTCAAAAGACAACCAGAGAATCATCATCCTTGGTGCCACAAATCGGCCTTTTGACCTTGATGAGGCTGTTATTCGTCGTCTGCCTAGAAGGATATATGTGGACCTACCAGATGCTGAGAATCGTATGAAGATTCTAAGAATATTTCTTGCATCAGAAAATATTGAACCTGGTTTCCAGTTTGACAAACTTGCAAATGCCACTGAAGGATATTCAGGGAGTGATCTGAAGAACCTCTGCGTTGCTGCTGCATACAGGCCTGTCCAAGAACTTCTGGAGGAAGAACAGAAGGGAGGCGGAGACATTCTTCCTCCAGTATTGAGGTCTCTCACTTTGGATGATTTTATCAAGTCAAAAGCGAAGGTGGGGCCATCTGTTGCATTTGATGCGGCAAGCATGAATGAACTGAGGAAATGGAATGAACAGTATGGAGAAGGTGGAAGCAGGAGGAAATCGCTGTTTGGTTTTGGGAACTAA 3099 42.14 MYARRLLKNRNLKWDFVFQPSKYYITPKHKDYMFSRSLCSRTLAGNCSLCDNLIRRYLSDSLLTQGVAAGNSNVRLHGSFNVSLRSSQLRFYSSEGDGRNASEDEHIPVKDGANLDKGKTKRKVREAVRHCDEHIRLGEQDQKEWLNNEKLAIESRKKESPFLSRREKLKNEFLRRVVPWEKITVSWETFPYHIPDHTKNLLVECAASHLKHKKFTVSYGARLTSSSGRILLQSVPGTELYRERLVRALARDLQVPLLVLDSSILASYDFAEGCSSECESDDDNLESCEDCISESEIEDESDSNDEEEWTSSGEVKSDASDNDDVQASAEALKKLVPHKLKKFEQRVAAELEISSESSTSEAVESSDKPKWSLKKGDRVKYVGPSIDIEADNRVILGKIPTCDGPTNAYTIFRGRPLSSGQRGEVYEVNGDRVAVILDRSEKKPNEGEEDEKLIDQAEKPSVYWMQVKDIEYDLDTEGEDRYIAMEALCEVLHSTQPLIVYFPDSSQWLLRAVSKPNQKEFVCRVQEMFDQLSGPVVLICGQNKTEAGSKEREKFTMLVPGLGRLAKLPVPLKQLTEGLKATKTSENNEILKLFSNVICIDTPKDEELLRTFNKQVEEDRRIIISRSNLNELHKVLEEHQLSCMDLLHVNTDGVILTKQKAEKIVGWAKNHYLSSCMLPSIKGERLSVPRESLEIAVLRLKVQEAISRKPSHSLKNLAKDEYESNFVSAVVPPGEIGVKFDDIGALEDVKKALNELVILPMRRPELFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISVTGSNLTSKWFGDAEKLTKALFSFAGKLAPVIIFVDEVDSLLGARGGAFEHEATRKMRNEFMAAWDGLRSKDNQRIIILGATNRPFDLDEAVIRRLPRRIYVDLPDAENRMKILRIFLASENIEPGFQFDKLANATEGYSGSDLKNLCVAAAYRPVQELLEEEQKGGGDILPPVLRSLTLDDFIKSKAKVGPSVAFDAASMNELRKWNEQYGEGGSRRKSLFGFGN* 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1932547 1958549 + Vvi1g196 Vvi1g196 769396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g196 1032 MobiDBLite consensus disorder prediction 294 308 - -
Vvi1g196 1032 MobiDBLite consensus disorder prediction 95 115 - -
Vvi1g196 1032 Gene3D - 738 1014 IPR027417 -
Vvi1g196 1032 ProSitePatterns AAA-protein family signature. 882 901 IPR003960 GO:0005524|GO:0016887
Vvi1g196 1032 Pfam ATPase family associated with various cellular activities (AAA) 779 909 IPR003959 GO:0005524|GO:0016887
Vvi1g196 1032 SMART AAA_5 775 912 IPR003593 -
Vvi1g196 1032 CDD AAA 777 910 - -
Vvi1g196 1032 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 737 959 IPR027417 -
Vvi1g196 1032 MobiDBLite consensus disorder prediction 294 324 - -
Vvi1g196 1032 MobiDBLite consensus disorder prediction 97 115 - -
Vvi1g196 1032 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1030 - -
Vvi1g196 1032 MobiDBLite consensus disorder prediction 309 323 - -
Vvi1g196 1032 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 1030 - -
Vvi1g196 1032 Pfam AAA+ lid domain 934 967 IPR041569 -
Vvi1g196 1032 Gene3D - 911 996 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g196 - - - vvi:100252512 1976.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g196 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006662 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32