Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g197 ATGAAAAAAAATTCTCCTATCAAATCCTTTGAACGCACTTACTTCGACTATCAATTTTCTCGAGAAAATTTGAGCTGCTTTTCCAGGGAAAATTTCAAATTCGGTCAATGCGGCTCAATTTGCAGATTCGGTGCTGGAATCTCCACGTCCTCGTCTGGTGTTGCCGAGAAGGATGATGAGGATCGGGGAAGAGATGACGGTGGCGGCGAAAGGCCAAAGGTTCAAGATTTGTCATGGATTGATTTGTATCTCCCGAAGCAGGCGCGTCCCTACGCGCGTCTTGCTCGCTTGGATAAGCCAATTGGGACGTGGTTGCTTGCCTGGCCATGTATGTGGTCAATTACGCTGGCTGCAAACCCTGGACACTTTCCTGATATTAAGATGTTGGCACTATTTGGTACTGGGGCTTTGCTATTAAGGGGTGCTGGATGTACCATAAATGACCTCCTTGATCAGGATATTGATCCAAAGGTGGAACGCACAAAACTGAGACCAATTGCAAGTGGTATTTTAACACCGTTTCAAGGGCTTTCTTTTCTTGGATTTCAATTGCTCCTGGGTCTTGGGATTCTCCTTCAACTCAACAATGACAGCCGCATTTTGGGAGCTTCATCCTTACTGCTAGTCTTCTCCTATCCCCTCATGAAGAGGCTGACATTTTGGCCTCAAGCCTATCTAGGTTTAACCTTTAACTGGGGAGCTTTATTAGGATGGTCTGCAGTTAGAGGAAGTTTGGATCCTGCCATTGTCTTCCCACTGTACATTTCTGGAGTGTGTTGGACTCTTGTGTATGACACAATTTATGCACATCAGGATAAAGAAGATGATTTGAAGGTGGGTGTTAAATCCACGGCCTTGAGATTTGGGGACTCAACAAAGGAGTGGCTTTCAGGGTTTGGAATTGCTTGTATTAGTAGTCTTGCCCTCAGTGGATTCAATGCTGATCTTGGATGGCCTTATTATGTGGCTTTGATGGCTGCATCTGGGCATTTAACGTGGCAGATTTGGACAGTTGACTTATCATGCCGTGCTGATTGCAATAGGAAGTTTGTGTCCAACAAGTGGTTTGGTGCTATTCTTTTTGGGGGAATTTTGCTTGGAAAACTCTCATCATAA 1116 44.89 MKKNSPIKSFERTYFDYQFSRENLSCFSRENFKFGQCGSICRFGAGISTSSSGVAEKDDEDRGRDDGGGERPKVQDLSWIDLYLPKQARPYARLARLDKPIGTWLLAWPCMWSITLAANPGHFPDIKMLALFGTGALLLRGAGCTINDLLDQDIDPKVERTKLRPIASGILTPFQGLSFLGFQLLLGLGILLQLNNDSRILGASSLLLVFSYPLMKRLTFWPQAYLGLTFNWGALLGWSAVRGSLDPAIVFPLYISGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSTKEWLSGFGIACISSLALSGFNADLGWPYYVALMAASGHLTWQIWTVDLSCRADCNRKFVSNKWFGAILFGGILLGKLSS* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1959015 1964386 + Vvi1g197 Vvi1g197 769397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g197 371 Gene3D UbiA prenyltransferase 250 370 - -
Vvi1g197 371 MobiDBLite consensus disorder prediction 49 72 - -
Vvi1g197 371 Pfam UbiA prenyltransferase family 107 350 IPR000537 GO:0016021|GO:0016765
Vvi1g197 371 Gene3D UbiA prenyltransferase 101 249 IPR044878 -
Vvi1g197 371 TIGRFAM ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 89 367 IPR006370 GO:0004659|GO:0016021
Vvi1g197 371 PANTHER PRENYLTRANSFERASES 34 368 IPR039653 -
Vvi1g197 371 Hamap 4-hydroxybenzoate octaprenyltransferase [ubiA]. 84 369 IPR006370 GO:0004659|GO:0016021
Vvi1g197 371 ProSitePatterns UbiA prenyltransferase family signature. 147 169 IPR030470 -
Vvi1g197 371 PANTHER 4-HYDROXYBENZOATE POLYPRENYLTRANSFERASE, MITOCHONDRIAL 34 368 - -
Vvi1g197 371 MobiDBLite consensus disorder prediction 54 72 - -
Vvi1g197 371 CDD PT_UbiA_COQ2 95 367 IPR039653 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g197 K06125 COQ2; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] - vvi:100247403 685.641
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g197 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006753 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 4 1 1 1 1 2 2 1 1 37