Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g198 ATGGAGAGGAGAAGGCATGAGCATGATTTCGAAGAAGAGTGGAGGGAGGCGGGAATTTCGAGAGGGTATTCTTACACTGACTACAACGTCAATGGCCGCAATATAGAGCGCATCGTAGAACCGGAAACGGTGGAGCAGGTGTTCAAGAACCTGGAGGTGCCGTCATGGAGGAAGCAGATAACGATTAGGGCAATGGTGACCAGCATCGTTCTCAGCTTTGTCTTCAACTTCGTAATCTGCAAGCTTAGTCTCACCACTGGTATCATTCCCTCTTTCAACGTCGCTGCGGGGCTTCTCGGCTTCGCCTTCGTCAAAGCCTGGGTTTCGCTCATTGAAAAGTTCGGACTCTTGAAGCAGCCTTTCACTCGACAGGAGAACACTGTCATTCAGACTTGCGTGGTAGCCGCCTCCGGGATTGCTTTTAACAATGGAACTTCAAGTTATTTGTTGGCAATGAGCTCAATCGTGGCTGATCAGGCGGATAGGGACATTCCAACCAATGTGAAATCTCTCTCGCTTGGTTGGATAATTGGGTTTCTCCTTACTGTGAGCTTCGTTGGCCTTTTCTTAATGGTTCCCTTGACAGAGATGATGATCATCAAGTATAAGTTGACGTATCCAACTGGAACTGCAACTGCCTACCTTATCAATAGCTTTCACACTCCTAGAGGAGCCAAGCTAGCAGGGCAGCAAGTTTCTGCGCTCTTCAAAAGCTTCTGTTTCAGTTTTGCATTCGCCTTTTTTCAGTGGTTTTTCAGGTCTGGAAGCGACTGTGGGTTCAGTAGTTTCCCTACATTTGGTCTCCAAGCATACTCTCATAGGTTCTACTTTGATTTCTCATCCACATACGTTGGTGTTGGAATGATTTGCCCTTATATGGTAAATGTATCTTTACTTCTGGGTTCTATCTTGTCGTGGGGAATAATGTGGCCATTGATTGAAAAGAAGGCAGGCATCTGGTACAGTGCCGACTTGCCTGCTAACAGTCTTCATGGCATCCAAGGATATAGGGTATTTCTGGCTATTGCCATGATGCTGGGCGACGGGCTTTACCATGTTGCCTATATAATGGTGAAAACCATGGTAAATATCATACAGCAGCATAGCATGAAGAGGAAAGAAGCAACAGAAAGAACTTCAAGACGGGATATCTCACGCTTGCATCCCCTCGCTCTATGTTCTTCAGCCAAATTCATTCCTAGCCCAATGTGCATAGCCATACCTTTCTATCTTGGCGGATACTTTTCCATTGATATGTGTATTGGGAGCTTGATTCTTCTCTTCTGGGGTATGAAGAACAAGCAGATGGCCAATGACTTCGGCCCTGCTGTGGCATCTGGCCTTATCTGTGGTGAGTCTTTGTGGGGTGTACCTGCAGCTATGCTCTCTCTTGCTGGCCTCAATGCTCCAATTTGCATGAAGTTCCTTTCAGCCTCTACCAACAATAAAATTGATGCCATCTTGAGTGCTTTGAATTCTTTGGCAAATATTTTCCCTAAAATGACCATTTTCAGCATTTATTCCCTTGCTAAAAAACATAAAAATAGGTACTTGTAG 1557 45.41 MERRRHEHDFEEEWREAGISRGYSYTDYNVNGRNIERIVEPETVEQVFKNLEVPSWRKQITIRAMVTSIVLSFVFNFVICKLSLTTGIIPSFNVAAGLLGFAFVKAWVSLIEKFGLLKQPFTRQENTVIQTCVVAASGIAFNNGTSSYLLAMSSIVADQADRDIPTNVKSLSLGWIIGFLLTVSFVGLFLMVPLTEMMIIKYKLTYPTGTATAYLINSFHTPRGAKLAGQQVSALFKSFCFSFAFAFFQWFFRSGSDCGFSSFPTFGLQAYSHRFYFDFSSTYVGVGMICPYMVNVSLLLGSILSWGIMWPLIEKKAGIWYSADLPANSLHGIQGYRVFLAIAMMLGDGLYHVAYIMVKTMVNIIQQHSMKRKEATERTSRRDISRLHPLALCSSAKFIPSPMCIAIPFYLGGYFSIDMCIGSLILLFWGMKNKQMANDFGPAVASGLICGESLWGVPAAMLSLAGLNAPICMKFLSASTNNKIDAILSALNSLANIFPKMTIFSIYSLAKKHKNRYL* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1967826 1973352 + Vvi1g198 Vvi1g198 769398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g198 518 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 56 369 IPR004813 GO:0035673
Vvi1g198 518 Pfam OPT oligopeptide transporter protein 59 381 IPR004813 GO:0035673
Vvi1g198 518 Pfam OPT oligopeptide transporter protein 395 462 IPR004813 GO:0035673
Vvi1g198 518 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL7-RELATED 42 375 - -
Vvi1g198 518 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL7-RELATED 394 478 - -
Vvi1g198 518 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 394 478 IPR045035 GO:0035673
Vvi1g198 518 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 42 375 IPR045035 GO:0035673
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g198 - - - vvi:100242270 714.916
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g198 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069230 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1