Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g2 ATGAGCTTTTCACAGGACATGGATGATGAGTATGAGAAACTTATTCGAAGAATGAACCCACCAAGGGTTGTAATTGATAATGAAACCTGCAAGAATGCTAGTGTGATACGGGTGGACAGTGCAAACAAACATGGAATACTTCTCGAAGTTGTACAAGTCCTTATTGATCTTAACCTTATTATAACTAAAGCTTATATATCTTCTGATGGTGGATGGTTCATGGATGTCTTTAATGTTACTGATCAAGATGGAAACAAGATTACAGATGAAGAGATTTTAGATTATATCCAAAAGTCACTGGGTTCGGATGCATGCTTCATATCTTCAATGAGAAGATCTGTTGGTGTTATACCTTCCACAGACCACACTTCAATTGAGTTGACTGGAAGTGACAGGCCAGGACTACTTTCAGAGGTGAGTGCTGTCCTAACCCACCTAAAATGCAGTGTGGTGAATGCTGAGGTTTGGACCCACAACACCCGGGCTGCAGCCGTGATGCACGTAACGGATGAGGAAACTGGCTGTGCTATTACTGACCCTGAAAGACTCTCTAAGGTCAAGCAACTTCTGTGCAATGTACTTAAGGGCAGCAATAAATCAAGGGAAGCTAAGACTCTTCTCTTTGATACTGTTTGCACTTTGACTGACATGCAATATGTGGTTTTCCATGCAAATGTTGATGCTGAGGGGCCTGAAGCTTATCAGGAATACTATATCAGGCATATAGATGGGTCTCCTGTGAAATCAGATGCGGAGAGACAGAGAGTGATTCAATGTCTTGAAGCAGCCATTGAGAGAAGAGTATCTGAGGGATTGAAGCTTGAATTGTGCACTACGGACAGAGTTGGGCTGCTATCTGATGTCACTCGCATCTTCCGTGAGAATAGCCTCTCAGTCACCAGGGCTGAAGTTACAACTAGAGCAGGCAAAGCTGTTAATACATTCCATGTTCGTGATGCATCCGGTTATCCTGTTGATGCTAAGACTATTGATTCCATCCGGGAAGCAATTGGCCAGACTATCCTCCAAGTGAAAGGCAGCCCTGAAGAGATAAAACAAATTCCTCAAGAATCTCCAACCAGATTCCTCCTTGTGGGTCTCTTCAGAGTGAATCCTACCTTTGTACATAGTAATCATGCAGTTTCATCAAATTCTTTTGCTATCATCATATCTCCTACACTATTTTTCGTTATACTTCTATGA 1203 42.23 MSFSQDMDDEYEKLIRRMNPPRVVIDNETCKNASVIRVDSANKHGILLEVVQVLIDLNLIITKAYISSDGGWFMDVFNVTDQDGNKITDEEILDYIQKSLGSDACFISSMRRSVGVIPSTDHTSIELTGSDRPGLLSEVSAVLTHLKCSVVNAEVWTHNTRAAAVMHVTDEETGCAITDPERLSKVKQLLCNVLKGSNKSREAKTLLFDTVCTLTDMQYVVFHANVDAEGPEAYQEYYIRHIDGSPVKSDAERQRVIQCLEAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLSVTRAEVTTRAGKAVNTFHVRDASGYPVDAKTIDSIREAIGQTILQVKGSPEEIKQIPQESPTRFLLVGLFRVNPTFVHSNHAVSSNSFAIIISPTLFFVILL* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32354 36097 + Vvi1g2 Vvi1g2 769202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g2 400 SUPERFAMILY ACT-like 269 339 IPR045865 -
Vvi1g2 400 Pfam ACT domain 279 333 IPR002912 -
Vvi1g2 400 Pfam ACT domain 123 172 IPR002912 -
Vvi1g2 400 CDD ACT_ACR_2 123 196 - -
Vvi1g2 400 CDD ACT_ACR_1 33 104 - -
Vvi1g2 400 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-LIKE ISOFORM X1 2 206 - -
Vvi1g2 400 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-LIKE ISOFORM X1 206 371 - -
Vvi1g2 400 Gene3D - 122 195 - -
Vvi1g2 400 Gene3D - 272 346 - -
Vvi1g2 400 CDD ACT_ACR_3 199 267 - -
Vvi1g2 400 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 2 206 IPR040217 -
Vvi1g2 400 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 206 371 IPR040217 -
Vvi1g2 400 SUPERFAMILY ACT-like 30 98 IPR045865 -
Vvi1g2 400 SUPERFAMILY ACT-like 119 194 IPR045865 -
Vvi1g2 400 ProSiteProfiles ACT domain profile. 273 353 IPR002912 -
Vvi1g2 400 ProSiteProfiles ACT domain profile. 35 112 IPR002912 -
Vvi1g2 400 ProSiteProfiles ACT domain profile. 124 211 IPR002912 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g2 - - - nnu:104599871 558.525
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g2 Vvi17g669 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g2 Blo01g00462 . . . . Bpe10g00911 Bma14g01718 . Cmo04g01798 Cmo18g01113 . Cma18g01089 . Car18g01010 . Cpe09g00233 Cpe01g01517 . . . . . . . . . . . . . . Cone13ag0891 Cone19ag0890 Cone6ag0514 Cone9ag0526 . Csa05g02523 . . Blo06g00939 Blo11g00801 . . . . . . . . . Cma04g01711 . Car04g01745 . . Cpe07g00095 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002935 2 4 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 2 2 1 1 2 3 4 1 53