Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g2 ATGAGCTTTTCACAGGACATGGATGATGAGTATGAGAAACTTATTCGAAGAATGAACCCACCAAGGGTTGTAATTGATAATGAAACCTGCAAGAATGCTAGTGTGATACGGGTGGACAGTGCAAACAAACATGGAATACTTCTCGAAGTTGTACAAGTCCTTATTGATCTTAACCTTATTATAACTAAAGCTTATATATCTTCTGATGGTGGATGGTTCATGGATGTCTTTAATGTTACTGATCAAGATGGAAACAAGATTACAGATGAAGAGATTTTAGATTATATCCAAAAGTCACTGGGTTCGGATGCATGCTTCATATCTTCAATGAGAAGATCTGTTGGTGTTATACCTTCCACAGACCACACTTCAATTGAGTTGACTGGAAGTGACAGGCCAGGACTACTTTCAGAGGTGAGTGCTGTCCTAACCCACCTAAAATGCAGTGTGGTGAATGCTGAGGTTTGGACCCACAACACCCGGGCTGCAGCCGTGATGCACGTAACGGATGAGGAAACTGGCTGTGCTATTACTGACCCTGAAAGACTCTCTAAGGTCAAGCAACTTCTGTGCAATGTACTTAAGGGCAGCAATAAATCAAGGGAAGCTAAGACTCTTCTCTTTGATACTGTTTGCACTTTGACTGACATGCAATATGTGGTTTTCCATGCAAATGTTGATGCTGAGGGGCCTGAAGCTTATCAGGAATACTATATCAGGCATATAGATGGGTCTCCTGTGAAATCAGATGCGGAGAGACAGAGAGTGATTCAATGTCTTGAAGCAGCCATTGAGAGAAGAGTATCTGAGGGATTGAAGCTTGAATTGTGCACTACGGACAGAGTTGGGCTGCTATCTGATGTCACTCGCATCTTCCGTGAGAATAGCCTCTCAGTCACCAGGGCTGAAGTTACAACTAGAGCAGGCAAAGCTGTTAATACATTCCATGTTCGTGATGCATCCGGTTATCCTGTTGATGCTAAGACTATTGATTCCATCCGGGAAGCAATTGGCCAGACTATCCTCCAAGTGAAAGGCAGCCCTGAAGAGATAAAACAAATTCCTCAAGAATCTCCAACCAGATTCCTCCTTGTGGGTCTCTTCAGAGTGAATCCTACCTTTGTACATAGTAATCATGCAGTTTCATCAAATTCTTTTGCTATCATCATATCTCCTACACTATTTTTCGTTATACTTCTATGA 1203 42.23 MSFSQDMDDEYEKLIRRMNPPRVVIDNETCKNASVIRVDSANKHGILLEVVQVLIDLNLIITKAYISSDGGWFMDVFNVTDQDGNKITDEEILDYIQKSLGSDACFISSMRRSVGVIPSTDHTSIELTGSDRPGLLSEVSAVLTHLKCSVVNAEVWTHNTRAAAVMHVTDEETGCAITDPERLSKVKQLLCNVLKGSNKSREAKTLLFDTVCTLTDMQYVVFHANVDAEGPEAYQEYYIRHIDGSPVKSDAERQRVIQCLEAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLSVTRAEVTTRAGKAVNTFHVRDASGYPVDAKTIDSIREAIGQTILQVKGSPEEIKQIPQESPTRFLLVGLFRVNPTFVHSNHAVSSNSFAIIISPTLFFVILL* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32354 36097 + Vvi1g2 Vvi1g2 769202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g2 400 SUPERFAMILY ACT-like 269 339 IPR045865 -
Vvi1g2 400 Pfam ACT domain 279 333 IPR002912 -
Vvi1g2 400 Pfam ACT domain 123 172 IPR002912 -
Vvi1g2 400 CDD ACT_ACR_2 123 196 - -
Vvi1g2 400 CDD ACT_ACR_1 33 104 - -
Vvi1g2 400 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-LIKE ISOFORM X1 2 206 - -
Vvi1g2 400 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-LIKE ISOFORM X1 206 371 - -
Vvi1g2 400 Gene3D - 122 195 - -
Vvi1g2 400 Gene3D - 272 346 - -
Vvi1g2 400 CDD ACT_ACR_3 199 267 - -
Vvi1g2 400 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 2 206 IPR040217 -
Vvi1g2 400 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 206 371 IPR040217 -
Vvi1g2 400 SUPERFAMILY ACT-like 30 98 IPR045865 -
Vvi1g2 400 SUPERFAMILY ACT-like 119 194 IPR045865 -
Vvi1g2 400 ProSiteProfiles ACT domain profile. 273 353 IPR002912 -
Vvi1g2 400 ProSiteProfiles ACT domain profile. 35 112 IPR002912 -
Vvi1g2 400 ProSiteProfiles ACT domain profile. 124 211 IPR002912 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g2 Vvi17g669 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g2 - - nnu:104599871 558.525