Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g20 ATGAACATTTTCAAGCAGCTAGCTTCCACCAGATGTGGGTTTAATGGTGGAATGAAGTCTTGTAGAGCAACATGTGTCTCTCTCCTCCATTCATCCTCAGGTACATCGGTGGAAGTACATTCCCAAGACCAGGAAGTAGTAATTGCTCTAGGAAGCAATGTGGGCAATAGAGTTGACAATTTCAATGAGGCCTTGCAGCTAATGAAGAAGTCAGGCATGCACATAACTAGACATGGATGTTTGTATGAGACAGAGCCTGTCTATGTGACTGATCAACCTCTCTTTCTCAACTCTGCTGTTAGAGGTATTACAAAACTTGGTCCCCATGAACTACTCAGAGTTCTGAAGAAAATTGAAAAGGATATGGGTCGGACTGATGGAATAAGGTATGGTCCGAGACCAATTGACCTGGATATTTTGTTCTATGGGAAGTTCAGGGTTAACTCTGAGATTCTTACCATCCCCCATGAAAGAATTTGGGAGAGACCTTTTGTGATGGCCCCATTGATGGATGTAATGGGATCAGCTATGGAGAGTGATACGAACGGGTTGAAAAGGGTTTTACCCACTGGAAATGTTTTATGGGACTGGTCACTGAAAACCTCTATGATGGGTATCCTTAATCTGACCCCAGATAGTTTTAGTGATGGAGGGAAGTTCCAGTCTGTGGAGGCTGCAGTTTCTCAGGTCCGCTTGATGATCTTAGAAGGGGCAGATATTATTGATATTGGTGCACAGTCCACACGCCCAATGGCATCTAGGCTTTCAGCTCAAGAGGAATTAGATAGGTTAATCCCTGTCTTGGATGCTGTTCTAAAGATGCCTGAGGTAGAGGGGAAGCTGTTATCTGTGGATACTTTTCATTCTGAAGTTGCTTCAGAAGCAATTGGCAAGGGAGCTCATATTGTAAATGATGTATCTGCAGGACAGCTAGATCCTAACATGCTTGATGTTGTTGCCAGCCTTAAGGTTCCATATGTTGCTATGCACATGAGGGGGAACCCATCTACCATGCAGAATAGCGAGAACCTGCAATACGATAATGTTTGCGAGCAGGTTGCCTCTGAGTTATACTTGCGAGTTAGAGATGCTGAATTATCTGGTATTCCAGCCTGGAGGATAATTATTGACCCTGGAATTGGATTCTCAAAGAACACTGAACATAATTTGGACATTCTCATGGGGTTGCCAAACATACGAATGGAGCTTGCAGGGAAGAGTTTGGCTCTCTCTCATGCTCCTATGTTGATTGGACCCTCGAGGAAGAGATTTTTAGGTGATATTTGTGCTCGCCCTGCTGCAGCTGAGAGAGACCCTGCAACCATTGCTGCTGTGACTGCTGGGGTTTTGGGCGGTGCAAACATTGTTAGGGCACATAATGTCAAAGATAATTTAGATGCTGTGAAGCTCTGTGATGCAATGGTGAAGCGTGAGAGATCTCAGGCATGA 1449 44.51 MNIFKQLASTRCGFNGGMKSCRATCVSLLHSSSGTSVEVHSQDQEVVIALGSNVGNRVDNFNEALQLMKKSGMHITRHGCLYETEPVYVTDQPLFLNSAVRGITKLGPHELLRVLKKIEKDMGRTDGIRYGPRPIDLDILFYGKFRVNSEILTIPHERIWERPFVMAPLMDVMGSAMESDTNGLKRVLPTGNVLWDWSLKTSMMGILNLTPDSFSDGGKFQSVEAAVSQVRLMILEGADIIDIGAQSTRPMASRLSAQEELDRLIPVLDAVLKMPEVEGKLLSVDTFHSEVASEAIGKGAHIVNDVSAGQLDPNMLDVVASLKVPYVAMHMRGNPSTMQNSENLQYDNVCEQVASELYLRVRDAELSGIPAWRIIIDPGIGFSKNTEHNLDILMGLPNIRMELAGKSLALSHAPMLIGPSRKRFLGDICARPAAAERDPATIAAVTAGVLGGANIVRAHNVKDNLDAVKLCDAMVKRERSQA* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 302205 305739 - Vvi1g20 Vvi1g20 769220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g20 482 PANTHER FOLATE SYNTHESIS PROTEINS 36 475 IPR045031 GO:0004156|GO:0009396
Vvi1g20 482 TIGRFAM DHPS: dihydropteroate synthase 203 473 IPR006390 GO:0004156|GO:0009396
Vvi1g20 482 ProSitePatterns Dihydropteroate synthase signature 2. 237 250 IPR000489 GO:0042558
Vvi1g20 482 Gene3D - 187 480 IPR011005 GO:0044237
Vvi1g20 482 SUPERFAMILY 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 46 177 IPR035907 -
Vvi1g20 482 CDD HPPK 46 172 IPR000550 GO:0003848|GO:0009396
Vvi1g20 482 CDD DHPS 201 472 IPR006390 GO:0004156|GO:0009396
Vvi1g20 482 Pfam Pterin binding enzyme 204 459 IPR000489 GO:0042558
Vvi1g20 482 Gene3D - 43 186 IPR035907 -
Vvi1g20 482 ProSitePatterns 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 129 140 IPR000550 GO:0003848|GO:0009396
Vvi1g20 482 SUPERFAMILY Dihydropteroate synthetase-like 190 476 IPR011005 GO:0044237
Vvi1g20 482 Pfam 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 47 173 IPR000550 GO:0003848|GO:0009396
Vvi1g20 482 ProSiteProfiles Pterin-binding domain profile. 201 469 IPR000489 GO:0042558
Vvi1g20 482 TIGRFAM folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 46 172 IPR000550 GO:0003848|GO:0009396
Vvi1g20 482 PANTHER FOLIC ACID SYNTHESIS PROTEIN FOL1 36 475 - -
Vvi1g20 482 ProSitePatterns Dihydropteroate synthase signature 1. 203 218 IPR000489 GO:0042558
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g20 K13941 folKP; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase / dihydropteroate synthase [EC:2.7.6.3 2.5.1.15] - vvi:100252672 938.332
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g20 . . . . . Bpe10g00904 . Bma15g00128 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0898 Cone19ag0895 . . . . . . Blo06g00930 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007691 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 2 1 35