Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g20 ATGAACATTTTCAAGCAGCTAGCTTCCACCAGATGTGGGTTTAATGGTGGAATGAAGTCTTGTAGAGCAACATGTGTCTCTCTCCTCCATTCATCCTCAGGTACATCGGTGGAAGTACATTCCCAAGACCAGGAAGTAGTAATTGCTCTAGGAAGCAATGTGGGCAATAGAGTTGACAATTTCAATGAGGCCTTGCAGCTAATGAAGAAGTCAGGCATGCACATAACTAGACATGGATGTTTGTATGAGACAGAGCCTGTCTATGTGACTGATCAACCTCTCTTTCTCAACTCTGCTGTTAGAGGTATTACAAAACTTGGTCCCCATGAACTACTCAGAGTTCTGAAGAAAATTGAAAAGGATATGGGTCGGACTGATGGAATAAGGTATGGTCCGAGACCAATTGACCTGGATATTTTGTTCTATGGGAAGTTCAGGGTTAACTCTGAGATTCTTACCATCCCCCATGAAAGAATTTGGGAGAGACCTTTTGTGATGGCCCCATTGATGGATGTAATGGGATCAGCTATGGAGAGTGATACGAACGGGTTGAAAAGGGTTTTACCCACTGGAAATGTTTTATGGGACTGGTCACTGAAAACCTCTATGATGGGTATCCTTAATCTGACCCCAGATAGTTTTAGTGATGGAGGGAAGTTCCAGTCTGTGGAGGCTGCAGTTTCTCAGGTCCGCTTGATGATCTTAGAAGGGGCAGATATTATTGATATTGGTGCACAGTCCACACGCCCAATGGCATCTAGGCTTTCAGCTCAAGAGGAATTAGATAGGTTAATCCCTGTCTTGGATGCTGTTCTAAAGATGCCTGAGGTAGAGGGGAAGCTGTTATCTGTGGATACTTTTCATTCTGAAGTTGCTTCAGAAGCAATTGGCAAGGGAGCTCATATTGTAAATGATGTATCTGCAGGACAGCTAGATCCTAACATGCTTGATGTTGTTGCCAGCCTTAAGGTTCCATATGTTGCTATGCACATGAGGGGGAACCCATCTACCATGCAGAATAGCGAGAACCTGCAATACGATAATGTTTGCGAGCAGGTTGCCTCTGAGTTATACTTGCGAGTTAGAGATGCTGAATTATCTGGTATTCCAGCCTGGAGGATAATTATTGACCCTGGAATTGGATTCTCAAAGAACACTGAACATAATTTGGACATTCTCATGGGGTTGCCAAACATACGAATGGAGCTTGCAGGGAAGAGTTTGGCTCTCTCTCATGCTCCTATGTTGATTGGACCCTCGAGGAAGAGATTTTTAGGTGATATTTGTGCTCGCCCTGCTGCAGCTGAGAGAGACCCTGCAACCATTGCTGCTGTGACTGCTGGGGTTTTGGGCGGTGCAAACATTGTTAGGGCACATAATGTCAAAGATAATTTAGATGCTGTGAAGCTCTGTGATGCAATGGTGAAGCGTGAGAGATCTCAGGCATGA 1449 44.51 MNIFKQLASTRCGFNGGMKSCRATCVSLLHSSSGTSVEVHSQDQEVVIALGSNVGNRVDNFNEALQLMKKSGMHITRHGCLYETEPVYVTDQPLFLNSAVRGITKLGPHELLRVLKKIEKDMGRTDGIRYGPRPIDLDILFYGKFRVNSEILTIPHERIWERPFVMAPLMDVMGSAMESDTNGLKRVLPTGNVLWDWSLKTSMMGILNLTPDSFSDGGKFQSVEAAVSQVRLMILEGADIIDIGAQSTRPMASRLSAQEELDRLIPVLDAVLKMPEVEGKLLSVDTFHSEVASEAIGKGAHIVNDVSAGQLDPNMLDVVASLKVPYVAMHMRGNPSTMQNSENLQYDNVCEQVASELYLRVRDAELSGIPAWRIIIDPGIGFSKNTEHNLDILMGLPNIRMELAGKSLALSHAPMLIGPSRKRFLGDICARPAAAERDPATIAAVTAGVLGGANIVRAHNVKDNLDAVKLCDAMVKRERSQA* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 302205 305739 - Vvi1g20 Vvi1g20 769220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g20 482 PANTHER FOLATE SYNTHESIS PROTEINS 36 475 IPR045031 GO:0004156|GO:0009396
Vvi1g20 482 TIGRFAM DHPS: dihydropteroate synthase 203 473 IPR006390 GO:0004156|GO:0009396
Vvi1g20 482 ProSitePatterns Dihydropteroate synthase signature 2. 237 250 IPR000489 GO:0042558
Vvi1g20 482 Gene3D - 187 480 IPR011005 GO:0044237
Vvi1g20 482 SUPERFAMILY 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 46 177 IPR035907 -
Vvi1g20 482 CDD HPPK 46 172 IPR000550 GO:0003848|GO:0009396
Vvi1g20 482 CDD DHPS 201 472 IPR006390 GO:0004156|GO:0009396
Vvi1g20 482 Pfam Pterin binding enzyme 204 459 IPR000489 GO:0042558
Vvi1g20 482 Gene3D - 43 186 IPR035907 -
Vvi1g20 482 ProSitePatterns 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 129 140 IPR000550 GO:0003848|GO:0009396
Vvi1g20 482 SUPERFAMILY Dihydropteroate synthetase-like 190 476 IPR011005 GO:0044237
Vvi1g20 482 Pfam 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 47 173 IPR000550 GO:0003848|GO:0009396
Vvi1g20 482 ProSiteProfiles Pterin-binding domain profile. 201 469 IPR000489 GO:0042558
Vvi1g20 482 TIGRFAM folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 46 172 IPR000550 GO:0003848|GO:0009396
Vvi1g20 482 PANTHER FOLIC ACID SYNTHESIS PROTEIN FOL1 36 475 - -
Vvi1g20 482 ProSitePatterns Dihydropteroate synthase signature 1. 203 218 IPR000489 GO:0042558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g20 K13941 - vvi:100252672 938.332