Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g202 ATGGCGCAGAAGGCGGTGTCGGAAGTGGAGTGGCCGGCGAACAAAGTCAGGGACACGTTTATCAATTTCTTTGAGTCCAAAAACCACGTCGATTGGAAATCTAGCCCTGTTGTTCCCGTCAATGATCCCACTCTTCTCTTTGCCAATGCTGGTATGAACCAGTTTAAGCCAATCTTTTTAGGGACTGCTGATCCAAACACTGCCTTGAGTAAACTAACTCGTGCTTGCAACACCCAAAAGTGTATCCGAGCTGGTGGGAAACACAATGATCTTGATGACGTGGGAAAAGATACTTACCACCACACATTCTTTGAGATGCTTGGTAATTGGTCATTTGGGGATTACTTCAAAAAGGAAGCTATTGAATGGGCTTGGGAGCTTCTCACCAAGGCAAAAAATCTGGTGTATAAACTACCTACTGATCGTATTTATGCCACTTATTTTGGTGGTGATGAGAAATCTGGTCTATCTCCTGATACTGAAGCTAGGGATATGTGGCTCAAGTTTTTGCCACCTGGACATGTATTGCCCTTTGGTTGTAAAGACAACTTCTGGGAGATGGGTGATACTGGTCCTTGTGGGCCTTGCACTGAAATACATTTTGATAGAATTGGTAATCGTGATGCTGCATCATTGGTTAACAATGATGACCCTACGTGTATTGAGATATGGAACCTCGTGTTTATACAGTTCAACAGGGAAAGCGATGGTTCTCTTAAATCTCTGCCTGCTAAACATGTTGACACTGGAATGGGCTTTGAAAGATTGACTTCTATTCTTCAGGGCAAGATGAGCAATTATGATACTGATGTGTTCTTACCCATCTTTGATGCTATTCAACAGGCGACTGGTGCTCGACCATATTCAGGGAAAGTTGGATCAGATGATGCAGACAAAGTTGACATGGCATACAGGGTTGTTGCTGATCACATAAGAACACTTTCTTTTGCTATTGCTGATGGTTCTTGTCCAGGCAATGAGGGCCGTGAATACGTTCTGAGGCGTATTCTCCGTAGAGCTGTTCGTTATGGAAGTGAAGTTCTGAAAGCACAAGAAGGATTCTTCAATAGCTTCGTAAACATTGTTGTAAAGGTGATGGGTGATGTTTTCCCTGAACTGAAACAACGTGAAGTGCACATCAGGGAAATAATTGCTGAAGAGGAAGCAAGTTTTGGCAAGACATTACTTAAGGGAATCGAGAAATTTAAGAAGGCTGCTCAGGAAGTTCAGGGGAAGATATTGAATGGACAGGAATTTTATAACATACAAGTATTTACTAATTTTATCCATGATTCACAAAAATGTTGTAACCATTTTAAGGAAATCTTCCTGTGGGTAGGGGGTGCATTCTGGCCTTCTGGGAGTGTGGAGGTTGTCCATTTTAGTGATATTTTAATGCTGTTCCAAGATGTAGAAGATGGAAACAAACTTGTGTCTTTGATGATTATTAAAGATGCATTTGTATTGTGGGACACATATGGCTTTCCTTTGGACCTGACTCAGTTGATGGCAGAGGAAAGAGGCTTAATTGTTGATGTTCAGGGTTTCAATGCTGCCCTGGATGAGGCAAGGGAAAGATCAAGAAGCGCTCAGAATAAGCAAGCTGGTGGCACTATTGTCATGGATGCTGATGCTACCTCAGCTTTGCACAAGCGGGGAGTTGCTCCAACAGATGATTCCTTCAAGTTCACATGGTTCCAGGATCATGGAAGTGTAATCAAAGCTATTTACTCCGGATCTGAGTTCTTGGAAAGTGCTTCTGCTGGGAATGAAGTTGGAATTGTTCTAGAAACAACAAGTTTTTATGCTGAACAAGGTGGTCAGATTTTTGATACCGGGTCACTTGAGGGAACCTCCGGGTCATTTCAAGTTTGTAATGTTCAAATTTATGGTGGCTTCATTCTTCATATTGGTTCCTTCACTGAAGCATCTGGCAGATTCTCTGTAGGTGATAAAGTAATATGTAAGGTTGACTATGACAGGCGTAAAGTCATTGCTCCTAACCATACCTGTACACATATGTTGAACTTTGCTCTTAGGGAAGTACTTGGCAATCATGTTGATCAGAAGGGATCCATTGTTCTTCCTGAGAAGTTACGATTTGATTTTTCTCATGGCAAGCCCGTTCATCCTGATCATTTAAGAAAGATTGAGTCAATTGTGAATGAGCAAATCGATGCTGAGTTAGATGTATTTTCAAAGGATGCAAGCCTTGCTGATGCCAAGAGTATAAATGGCTTACGAGCTGTTTTTGGAGAAGTTTATCCAGACCCAGTTAGGGTTGTGTCAATTGGTCAAAAAGTGGAGGATCTCTTGGCTGATCCAGGAAATGAAAAATGGTTATCAATTTCTGCAGAACTTTGTGGAGGTACCCATATATCAAATACCCGAGAGGCTAAGGCATTTGCTCTTTTATCTGAGGAAGGAATCGCCAAGGGAATCCGAAGGATTACTGCTGTTACAACTGATGTTGCTTTTAAGGCAATAGAGTTGGCACGCTCGCTTGAACAGGAAGTGGATGATGCATCTAAGACGGAAGGGATCTCGTTGGAAAAGAAAGTTGCTTCTTTAAGAAGTCGTGTTGACTCTGCGCCTATTCCAGCAGCCAGGAAAGCTGATCTCAGGGCCAAGATTTCCCTACTTCAGGATCAAGTCAGGAAGGCACAAAAGAAGTTCGCTGAAGAAAATATACAGAAAGCTGTCAAGGCTGCAACTGATATGGCCCAGCTTGCTGCTTCAGATGGAAAAACATTCTGCATCTCTCATGTGGATGTTGGTTTAGATACAACTGCAGTGCGTGAAGCAGTCCTAAAAGTCATAGAGCAAAAGGGAATATCGGTGATGATTTTCAGTACAGATGAAACCACTAACAAGGCGGTAGTGTATGCTGGAGTGCCACAGAAGGGAGATAAAGCAAAGCAGTTAGAGGTGTCAGAATGGTTGACAGCAGCTTTAGGGCCTCTAAAAGGGCGATGTGGTAAAGGAAAAGGCGGTCTTGCTCAAGGCCAGGGTACAGATGCATCGCATGTGAAGGAGGCCATGGATGTGGCAGAAAATTTTGCATCAATGAAATTGAGATGA 3081 42.68 MAQKAVSEVEWPANKVRDTFINFFESKNHVDWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKAKNLVYKLPTDRIYATYFGGDEKSGLSPDTEARDMWLKFLPPGHVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNLVFIQFNRESDGSLKSLPAKHVDTGMGFERLTSILQGKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNSFVNIVVKVMGDVFPELKQREVHIREIIAEEEASFGKTLLKGIEKFKKAAQEVQGKILNGQEFYNIQVFTNFIHDSQKCCNHFKEIFLWVGGAFWPSGSVEVVHFSDILMLFQDVEDGNKLVSLMIIKDAFVLWDTYGFPLDLTQLMAEERGLIVDVQGFNAALDEARERSRSAQNKQAGGTIVMDADATSALHKRGVAPTDDSFKFTWFQDHGSVIKAIYSGSEFLESASAGNEVGIVLETTSFYAEQGGQIFDTGSLEGTSGSFQVCNVQIYGGFILHIGSFTEASGRFSVGDKVICKVDYDRRKVIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVHPDHLRKIESIVNEQIDAELDVFSKDASLADAKSINGLRAVFGEVYPDPVRVVSIGQKVEDLLADPGNEKWLSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDVAFKAIELARSLEQEVDDASKTEGISLEKKVASLRSRVDSAPIPAARKADLRAKISLLQDQVRKAQKKFAEENIQKAVKAATDMAQLAASDGKTFCISHVDVGLDTTAVREAVLKVIEQKGISVMIFSTDETTNKAVVYAGVPQKGDKAKQLEVSEWLTAALGPLKGRCGKGKGGLAQGQGTDASHVKEAMDVAENFASMKLR* 1027
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2041853 2062434 - Vvi1g202 Vvi1g202 769402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g202 1026 SUPERFAMILY ThrRS/AlaRS common domain 657 835 IPR018163 GO:0000166
Vvi1g202 1026 PRINTS Alanyl-tRNA synthetase signature 89 100 IPR002318 GO:0000166|GO:0005737
Vvi1g202 1026 PRINTS Alanyl-tRNA synthetase signature 221 232 IPR002318 GO:0000166|GO:0005737
Vvi1g202 1026 PRINTS Alanyl-tRNA synthetase signature 248 261 IPR002318 GO:0000166|GO:0005737
Vvi1g202 1026 PRINTS Alanyl-tRNA synthetase signature 305 321 IPR002318 GO:0000166|GO:0005737
Vvi1g202 1026 PRINTS Alanyl-tRNA synthetase signature 329 342 IPR002318 GO:0000166|GO:0005737
Vvi1g202 1026 CDD AlaRS_core 13 263 - -
Vvi1g202 1026 SUPERFAMILY Class II aaRS and biotin synthetases 12 267 IPR045864 -
Vvi1g202 1026 Gene3D - 912 1021 - -
Vvi1g202 1026 TIGRFAM alaS: alanine--tRNA ligase 15 421 IPR002318 GO:0000166|GO:0005737
Vvi1g202 1026 Coils Coil 513 533 - -
Vvi1g202 1026 Gene3D - 658 834 - -
Vvi1g202 1026 SUPERFAMILY Translation proteins 582 657 IPR009000 -
Vvi1g202 1026 Coils Coil 871 898 - -
Vvi1g202 1026 Pfam tRNA synthetases class II (A) 15 421 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Vvi1g202 1026 Pfam tRNA synthetases class II (A) 478 661 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Vvi1g202 1026 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 759 817 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vvi1g202 1026 Pfam DHHA1 domain 874 1019 IPR003156 GO:0003676
Vvi1g202 1026 Hamap Alanine--tRNA ligase [alaS]. 1 1025 IPR023033 GO:0004813
Vvi1g202 1026 PANTHER BNACNNG61840D PROTEIN 483 1025 - -
Vvi1g202 1026 PANTHER BNACNNG61840D PROTEIN 5 423 - -
Vvi1g202 1026 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 268 535 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Vvi1g202 1026 Gene3D - 583 657 - -
Vvi1g202 1026 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 11 831 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Vvi1g202 1026 PANTHER ALANYL-TRNA SYNTHETASE 5 423 - -
Vvi1g202 1026 PANTHER ALANYL-TRNA SYNTHETASE 483 1025 - -
Vvi1g202 1026 SMART tRNA_SAD_4 759 818 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vvi1g202 1026 Gene3D Bira Bifunctional Protein; Domain 2 12 264 IPR045864 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g202 K01872 AARS, alaS; alanyl-tRNA synthetase [EC:6.1.1.7] - pop:7486389 1470.29
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g202 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003651 2 1 1 2 2 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 2 5 2 2 46