Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g21 ATGGCTTCTCTCTCCTTCACACAATTTCTCTCTCTACCCAGGTGGCACTCGAATTTACCCCTTTACACATCATTGAACTTGATGCAAATTCAGGATATTCGACTGCAGAATAGATGGGAACTTACAGCTGTGTCTAAGAAAAAAATTGTGGAGTCCTTGGCAGTAACTGAAGAACCAGTTGTTGTAAAGAAGAAATCCAAACAATCTCCTACACGAAGTAGAAAAAAGGCAGTACCTGACACCCCAGAGGAGAATTCTGAGTTGTCAGTGAAGAGTGATGTTACAGAAGTGGTAGTCAATACTCCATCTGCATCAAGTGACGCTTCCAAGAAAACCCCACGAAGGACTCGAAGGAAAGCTGCCTCTAGTTCTACTGGCATCATGGAAGAGAGAATTGAGAAGAAGGTGAGGACACGAAGGAAGACTACAAAGAAGGTTGACAACATAGAAGATCAAGGTGGTGAGACTGACCTTAGTGATCACGAAGGTTCCACATTCACTGCAAAGGTGGAGGATGAAGAGGAGGAAGACCTAGATCTTGGAAAAGATGATGAAGATATTAGCTCCACATATGGTTGGCCTCCTCTTGTTTGTTGCTTTGGAGCTGCTCAACATGCTTTTGTGCCGTCAGGAAGACCAGCCAACAGACTTATAGACCATGAAATCCATGAAAGAATGAAGGATACATTTTGGAACCCAGAAAAATTTGTTCGGGCTCCTGGTGGATCTGCAGGTAGTGTTGCAGTAGCTCTTGCAAGCTTAGGTGGTAAGGTAGCCTTCATGGGAAAACTCGGGGATGATGACTTCGGTCAGACTATGCTATATTATATGAATGTGAGCAATGTTCAAACTCGATCTGTTTGTATTGATGGTAAAAAGGCAACAGCAGTATCACAAATGAAGATTGGAAGGAGGGGGGGCTTGAAAATGACTTGTGTCAAACCATGTGCTGAGGATTCTTTGTCAAGGTCTGAGATCAATATTGATGTGCTGAGGGAGGCAAAGATGTTCTACTTCAACACATCATCCCTGCTTGATCAGAACATGGCATCAACAACATTCCGTGCAATCAAAATTTCTAAGAAACTAGGAGGGGTTATCTTTTATGATCTAAATCTTCCGTTGCCACTCTGGCAATCTGGCCAAGAAACCAAGAAGTTCATACAGCAAGCATGGAATCTTGCAGATATTATTGAGGTTACCAAGCAAGAACTTGAATTTATATGTGGGATCAAGTCCACTGAGAATTTTGACACCAAGGATAACAACAATTCTAAGTTTGTTCATTATGATCCAGTAGTGGTTGGACCTCTTTGGCATGAGAATCTCAAGGTTTTGTTTGTAACAAATGGGACTTCTAAGATTCATTTCTATACAAAGGAGGAAAATGGTGCAGTTCATGGGATGGAGGATGCACCCATTACACCTTTCACTTGTGACATGTCTGCATCTGGAGATGGTATTGTCGCAGGTCTCATGAGGATGTTAACAGTGCAGCCGCATCTCATCACTGATAAGGGATACTTGGAGCATTCAATCAGGTATGCCATCGATTGTGGAGTCATAGACCAATGGTTACTTGCACGACAACGTGGCTACCCTCCTAAAGAAGATGTGGAAGAAGAAGTGGTCCCTGATCAAGATGGTATAAGATCGATAACAGAGAAGGAATACCGCACATTAGCACCTGTAAGTTGA 1698 42.7 MASLSFTQFLSLPRWHSNLPLYTSLNLMQIQDIRLQNRWELTAVSKKKIVESLAVTEEPVVVKKKSKQSPTRSRKKAVPDTPEENSELSVKSDVTEVVVNTPSASSDASKKTPRRTRRKAASSSTGIMEERIEKKVRTRRKTTKKVDNIEDQGGETDLSDHEGSTFTAKVEDEEEEDLDLGKDDEDISSTYGWPPLVCCFGAAQHAFVPSGRPANRLIDHEIHERMKDTFWNPEKFVRAPGGSAGSVAVALASLGGKVAFMGKLGDDDFGQTMLYYMNVSNVQTRSVCIDGKKATAVSQMKIGRRGGLKMTCVKPCAEDSLSRSEINIDVLREAKMFYFNTSSLLDQNMASTTFRAIKISKKLGGVIFYDLNLPLPLWQSGQETKKFIQQAWNLADIIEVTKQELEFICGIKSTENFDTKDNNNSKFVHYDPVVVGPLWHENLKVLFVTNGTSKIHFYTKEENGAVHGMEDAPITPFTCDMSASGDGIVAGLMRMLTVQPHLITDKGYLEHSIRYAIDCGVIDQWLLARQRGYPPKEDVEEEVVPDQDGIRSITEKEYRTLAPVS* 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 305942 311685 + Vvi1g21 Vvi1g21 769221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g21 565 MobiDBLite consensus disorder prediction 143 168 - -
Vvi1g21 565 Pfam pfkB family carbohydrate kinase 230 520 IPR011611 -
Vvi1g21 565 PANTHER HEXOKINASE FAMILY MEMBER 89 562 - -
Vvi1g21 565 PANTHER FRUCTOKINASE-LIKE 2, CHLOROPLASTIC 89 562 - -
Vvi1g21 565 SUPERFAMILY Ribokinase-like 225 541 IPR029056 -
Vvi1g21 565 Gene3D - 197 549 IPR029056 -
Vvi1g21 565 MobiDBLite consensus disorder prediction 91 109 - -
Vvi1g21 565 Coils Coil 132 152 - -
Vvi1g21 565 MobiDBLite consensus disorder prediction 73 90 - -
Vvi1g21 565 CDD bac_FRK 196 525 - -
Vvi1g21 565 MobiDBLite consensus disorder prediction 59 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g21 - - - vvi:100247573 1047.34
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g21 . . . . . Bpe10g00903 . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0899 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011114 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 31