Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g21 ATGGCTTCTCTCTCCTTCACACAATTTCTCTCTCTACCCAGGTGGCACTCGAATTTACCCCTTTACACATCATTGAACTTGATGCAAATTCAGGATATTCGACTGCAGAATAGATGGGAACTTACAGCTGTGTCTAAGAAAAAAATTGTGGAGTCCTTGGCAGTAACTGAAGAACCAGTTGTTGTAAAGAAGAAATCCAAACAATCTCCTACACGAAGTAGAAAAAAGGCAGTACCTGACACCCCAGAGGAGAATTCTGAGTTGTCAGTGAAGAGTGATGTTACAGAAGTGGTAGTCAATACTCCATCTGCATCAAGTGACGCTTCCAAGAAAACCCCACGAAGGACTCGAAGGAAAGCTGCCTCTAGTTCTACTGGCATCATGGAAGAGAGAATTGAGAAGAAGGTGAGGACACGAAGGAAGACTACAAAGAAGGTTGACAACATAGAAGATCAAGGTGGTGAGACTGACCTTAGTGATCACGAAGGTTCCACATTCACTGCAAAGGTGGAGGATGAAGAGGAGGAAGACCTAGATCTTGGAAAAGATGATGAAGATATTAGCTCCACATATGGTTGGCCTCCTCTTGTTTGTTGCTTTGGAGCTGCTCAACATGCTTTTGTGCCGTCAGGAAGACCAGCCAACAGACTTATAGACCATGAAATCCATGAAAGAATGAAGGATACATTTTGGAACCCAGAAAAATTTGTTCGGGCTCCTGGTGGATCTGCAGGTAGTGTTGCAGTAGCTCTTGCAAGCTTAGGTGGTAAGGTAGCCTTCATGGGAAAACTCGGGGATGATGACTTCGGTCAGACTATGCTATATTATATGAATGTGAGCAATGTTCAAACTCGATCTGTTTGTATTGATGGTAAAAAGGCAACAGCAGTATCACAAATGAAGATTGGAAGGAGGGGGGGCTTGAAAATGACTTGTGTCAAACCATGTGCTGAGGATTCTTTGTCAAGGTCTGAGATCAATATTGATGTGCTGAGGGAGGCAAAGATGTTCTACTTCAACACATCATCCCTGCTTGATCAGAACATGGCATCAACAACATTCCGTGCAATCAAAATTTCTAAGAAACTAGGAGGGGTTATCTTTTATGATCTAAATCTTCCGTTGCCACTCTGGCAATCTGGCCAAGAAACCAAGAAGTTCATACAGCAAGCATGGAATCTTGCAGATATTATTGAGGTTACCAAGCAAGAACTTGAATTTATATGTGGGATCAAGTCCACTGAGAATTTTGACACCAAGGATAACAACAATTCTAAGTTTGTTCATTATGATCCAGTAGTGGTTGGACCTCTTTGGCATGAGAATCTCAAGGTTTTGTTTGTAACAAATGGGACTTCTAAGATTCATTTCTATACAAAGGAGGAAAATGGTGCAGTTCATGGGATGGAGGATGCACCCATTACACCTTTCACTTGTGACATGTCTGCATCTGGAGATGGTATTGTCGCAGGTCTCATGAGGATGTTAACAGTGCAGCCGCATCTCATCACTGATAAGGGATACTTGGAGCATTCAATCAGGTATGCCATCGATTGTGGAGTCATAGACCAATGGTTACTTGCACGACAACGTGGCTACCCTCCTAAAGAAGATGTGGAAGAAGAAGTGGTCCCTGATCAAGATGGTATAAGATCGATAACAGAGAAGGAATACCGCACATTAGCACCTGTAAGTTGA 1698 42.7 MASLSFTQFLSLPRWHSNLPLYTSLNLMQIQDIRLQNRWELTAVSKKKIVESLAVTEEPVVVKKKSKQSPTRSRKKAVPDTPEENSELSVKSDVTEVVVNTPSASSDASKKTPRRTRRKAASSSTGIMEERIEKKVRTRRKTTKKVDNIEDQGGETDLSDHEGSTFTAKVEDEEEEDLDLGKDDEDISSTYGWPPLVCCFGAAQHAFVPSGRPANRLIDHEIHERMKDTFWNPEKFVRAPGGSAGSVAVALASLGGKVAFMGKLGDDDFGQTMLYYMNVSNVQTRSVCIDGKKATAVSQMKIGRRGGLKMTCVKPCAEDSLSRSEINIDVLREAKMFYFNTSSLLDQNMASTTFRAIKISKKLGGVIFYDLNLPLPLWQSGQETKKFIQQAWNLADIIEVTKQELEFICGIKSTENFDTKDNNNSKFVHYDPVVVGPLWHENLKVLFVTNGTSKIHFYTKEENGAVHGMEDAPITPFTCDMSASGDGIVAGLMRMLTVQPHLITDKGYLEHSIRYAIDCGVIDQWLLARQRGYPPKEDVEEEVVPDQDGIRSITEKEYRTLAPVS* 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 305942 311685 + Vvi1g21 Vvi1g21 769221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g21 565 MobiDBLite consensus disorder prediction 143 168 - -
Vvi1g21 565 Pfam pfkB family carbohydrate kinase 230 520 IPR011611 -
Vvi1g21 565 PANTHER HEXOKINASE FAMILY MEMBER 89 562 - -
Vvi1g21 565 PANTHER FRUCTOKINASE-LIKE 2, CHLOROPLASTIC 89 562 - -
Vvi1g21 565 SUPERFAMILY Ribokinase-like 225 541 IPR029056 -
Vvi1g21 565 Gene3D - 197 549 IPR029056 -
Vvi1g21 565 MobiDBLite consensus disorder prediction 91 109 - -
Vvi1g21 565 Coils Coil 132 152 - -
Vvi1g21 565 MobiDBLite consensus disorder prediction 73 90 - -
Vvi1g21 565 CDD bac_FRK 196 525 - -
Vvi1g21 565 MobiDBLite consensus disorder prediction 59 177 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g21 - - vvi:100247573 1047.34