Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g210 ATGCTGGAAAATGGTGAGGAAGAACTCAGGATAGGCCACTATAAGGTTAAATTAGGCTCTGAGGAATCAGAAGAAGAATGTGCTGTCTGTCTATGCAAGATTGAAGAAGGAGATGAGATAAGCGACTTGAGATGCGATCATCTGTTTCACAAAGTTTGCTTGGATAGATGGGTTCAGTATAAGCGATCAACCTGTCCGCTGTGTCGTGATTCTCTAGCTCCATGTAGAGCTGTTGCTGAGCTGGGTCAAGAGGTGCTTGTGTTTAGGTTTTGCTCTTTCAGCTCCGGTGACCGGAATAGTTGGTGGCTGCGCTAA 315 45.71 MLENGEEELRIGHYKVKLGSEESEEECAVCLCKIEEGDEISDLRCDHLFHKVCLDRWVQYKRSTCPLCRDSLAPCRAVAELGQEVLVFRFCSFSSGDRNSWWLR* 105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2145559 2145874 - Vvi1g210 Vvi1g210 769410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g210 104 ProSiteProfiles Zinc finger RING-type profile. 27 69 IPR001841 -
Vvi1g210 104 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 77 IPR013083 -
Vvi1g210 104 SMART ring_2 27 68 IPR001841 -
Vvi1g210 104 SMART ringv_2 26 69 IPR011016 GO:0008270
Vvi1g210 104 PANTHER RING ZINC FINGER PROTEIN-RELATED 6 97 - -
Vvi1g210 104 Pfam Ring finger domain 26 69 IPR001841 -
Vvi1g210 104 SUPERFAMILY RING/U-box 21 75 - -
Vvi1g210 104 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 6 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g210 K16282 RHA2; E3 ubiquitin-protein ligase RHA2 [EC:2.3.2.27] - vvi:104878972 225.713
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016538 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 4 6