Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g213 ATGGCGGTTCACCTGAACTGGTCTTTACCTACTAAGTCTTCCCTCGATTTCCTCCATCGGACCTTCCAAGAAGCTCCGGCTCCTCCCAGACTCCTCTCCGTCCGATCTCAAAAGCTCAGCTCCGGTTCTGGAGATCCATTCCTTTCTAATGCGTCCGGGTTCGGACCTAGGAAATCCGCGAATTTGGATCGTCCAGAAGCTTCGATCGGATCTTCTGGTTCCTCTTCGTCTTCGGTTATTGATTTCCTCACATTGTGTCATTCGCTCAAGACCACAAAAAGGAAGGGATGGATCAATAATGGGATAAAAGGTCCGGAGTCTATTGCTGATCACATGTACCGCATGGCATTGATGGCGTTGATTGCTGGTGACCTTCATGGTGTGAACAGGGAAAGGTGTATTAAGATAGCAATTGTGCATGATATTGCAGAAGCTATTGTTGGAGATATAACACCATCTGATGGCATTCCTAAAAAAGAAAAGAGCAGACTAGAGCGGGCAGCTTTAAAGGAAATGTGTGAAGTTCTTGGTGGAGGGATTAGAGCTGACGAGATCAAAGAACTATGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGACAAAGTTGAGCTGATTTTGCAAGCACTGGAATATGAAATGGAACATGGTAAGGTCCTGGATGAGTTTTTCCATTCAACTGCAGGAAAATTTCAGACTGAAATAGGAAAAAGTTGGGCAGCTGAGATCACTTCAAGGAGAAATTCATGGTTGGGAAACAGGCCGAACTGA 789 44.61 MAVHLNWSLPTKSSLDFLHRTFQEAPAPPRLLSVRSQKLSSGSGDPFLSNASGFGPRKSANLDRPEASIGSSGSSSSSVIDFLTLCHSLKTTKRKGWINNGIKGPESIADHMYRMALMALIAGDLHGVNRERCIKIAIVHDIAEAIVGDITPSDGIPKKEKSRLERAALKEMCEVLGGGIRADEIKELWEEYENNSSLEANLVKDFDKVELILQALEYEMEHGKVLDEFFHSTAGKFQTEIGKSWAAEITSRRNSWLGNRPN* 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2197475 2202142 + Vvi1g213 Vvi1g213 769413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g213 262 PANTHER METAL-DEPENDENT PHOSPHOHYDROLASE 14 260 - -
Vvi1g213 262 Pfam HD domain 86 244 IPR006674 -
Vvi1g213 262 Gene3D Hypothetical protein af1432 67 259 - -
Vvi1g213 262 PANTHER UNCHARACTERIZED 14 260 IPR039356 GO:0002953
Vvi1g213 262 SUPERFAMILY HD-domain/PDEase-like 78 257 - -
Vvi1g213 262 ProSiteProfiles HD domain profile. 108 212 IPR006674 -
Vvi1g213 262 SMART hd_13 104 221 IPR003607 -
Vvi1g213 262 MobiDBLite consensus disorder prediction 36 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g213 K07023 YGK1, HDDC2; 5'-deoxynucleotidase [EC:3.1.3.89] - vvi:100260974 516.924
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g213 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001138 3 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 1 2 3 6 4 79