Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g217 ATGGCCACGGCGTCGCCGCCTCCTAATTCTTCTCCTTCCGCGGTTCCTCCGACCTCTGCCGCCACTCCACCACCGCCCTTGTCTTCTCCTCCTCCTCCTCCGGAGTCTTCTACTCCTCCATCTTCCCAGCCCAATGCAGATCCACCGGATGGTGCAGCAGGTTCTACTTCATCCCCACCACCTCAATCACCTCCTGCTGTTCCAGCAGCGCCACCTCCAGCATCACCACCACCACCACCACCAACTCCTTCCCTAGCCAATTCTCCTTCGTCGCCTCCACCTCCTTCTCCTCCACCCCCTTCTCCCAATGCTCCTCCACCGACTCCTCCGCCATCTCCACCCATTGCTCCAGTTCCGCCTCCCTCCAATCCCTCACCTCCGCCATTAACACCACCACCAACTTCACCTCCACCGCCACCACCACCGACCAATCCGCCCAGGAGTCCGCCTCCCCCACCACCTACAGAACCACCAGTGACTTCACCTCCTCCACCATCTTCAAACCCCCCTAAAAGTTCACCACCACCATCAGAACCACCAAAAACCTCACCCCCACCACCATCTAAACCACCCCCTGTTTCACCACCATCACCATCACCATCAAGTCCACCTGAGGATTCACCTCCACCACCTGTACCTGTGCCACCCAGTAATTCAACCCCTCCCGCCCCGTCTCCATCTGGTTCTCAACCAGCAACTCCACCCTCTCCAAATTCTCCTCCAAAAGGATCGCCACCACCACCCAGGACACCAACTCCACCTCCTCCTGCACGTTCCCCACCACCTCTTTCTCCCCCTTCATCTCCTCAAACTCCAAACTCGCCATCAGATAGCCCATCTGTGAACAATTCTACCCCCAATGGAAGTCCAAATTCTACAAGTAAAGGAGGCATTGGTACTGTAGGTACAGTGGCTATTGGATTGGTACTGGGTTTAGTAGTACTTGTTCTCATTGGAGTGGCTTTCTTGTGCCTGCGGAAGCGGAAGAAAAAGGTATCTGGACTTAATGGTGGCTATGTTATGCCAGCCACACTGGGTTCTTCTCCGAGATCAGATTCATCTTTTACAAAGACACTGTCTTCAGCTCCCCTCATAGGAAGTGGTTCGGGTAGCGACTTTGTATACTCACCATCTGAGCCAGGAGGATTAGGCAATTCAAGATCATGGTTTACATATGAAGAACTAGTCAAGGCAACAAATGGATTTTCAACTCAAAATCTTCTGGGCGAAGGTGGATTTGGTTCTGTATATAAAGGATACCTGCCAGACGGGAGAGAGATAGCAGTAAAGCAGCTAAAGATTGGTGGGGCCCAGGGAGAGCGAGAATTTAAAGCTGAAGTTGAGATTATTAGTCGGATACACCATCGCCATTTGGTCTCACTTGTGGGTTACTGCATTTCTGAGAGCCAAAGGCTGCTCGTCTATGACTATGTTCCTAACAATACCCTTTATTTCCATCTTCATGGGGAAGGTAGGCCAGTTATGGACTGGGCAACACGTGTTAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTATCTTCATGAAGACTGCCATCCTCGGGTTATTCACAGGGATATTAAGTCTTCAAATATTCTTTTAAATTATAACTTTGAAGCTCAGGTTTCAGATTTTGGACTTGCTAAATTAGCTCTAGATGCTGATACTCACGTAACAACACGTGTAATGGGGACTTTTGGATATATGGCTCCCGAGTATGCATCAAGTGGCAAGTTAACTGAGAAATCTGATGTCTTCTCTTTTGGAGTTGTCCTTCTGGAGCTTATTACTGGACGGAAACCTGTGGATGCATCTCAACCCGTGGGTGATGAGAGTCTAGTTGAATGGGCTCGACCTTTGCTTAGTCATGCCCTTGAGAATGAGGAGTTCGAAGGTTTGACAGATCCAAGGCTTGAGAAAAACTATGTAGAAAGTGAAATGTTTCGTATGCTAGAGGCTGCTGCAGCTTGTGTCCGTCATTCAGCTGCAAAGAGACCACGAATGGGACAGGTTGTTAGAGCTTTTGATAGTATGGGTACCTCGGATCTGTCCAATGGAATGAGGGTGGGTGAAAGTGAAGTATTTAATTCTGCACAACAATCTGAAGAAATTAGATGGTTTCAGAGGATGGCATTTGGTAGTCAAGACTACAGTACAGACTTTTTTAGCCAAGGTGGCTAG 2181 49.56 MATASPPPNSSPSAVPPTSAATPPPPLSSPPPPPESSTPPSSQPNADPPDGAAGSTSSPPPQSPPAVPAAPPPASPPPPPPTPSLANSPSSPPPPSPPPPSPNAPPPTPPPSPPIAPVPPPSNPSPPPLTPPPTSPPPPPPPTNPPRSPPPPPPTEPPVTSPPPPSSNPPKSSPPPSEPPKTSPPPPSKPPPVSPPSPSPSSPPEDSPPPPVPVPPSNSTPPAPSPSGSQPATPPSPNSPPKGSPPPPRTPTPPPPARSPPPLSPPSSPQTPNSPSDSPSVNNSTPNGSPNSTSKGGIGTVGTVAIGLVLGLVVLVLIGVAFLCLRKRKKKVSGLNGGYVMPATLGSSPRSDSSFTKTLSSAPLIGSGSGSDFVYSPSEPGGLGNSRSWFTYEELVKATNGFSTQNLLGEGGFGSVYKGYLPDGREIAVKQLKIGGAQGEREFKAEVEIISRIHHRHLVSLVGYCISESQRLLVYDYVPNNTLYFHLHGEGRPVMDWATRVKVAAGAARGIAYLHEDCHPRVIHRDIKSSNILLNYNFEAQVSDFGLAKLALDADTHVTTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVVLLELITGRKPVDASQPVGDESLVEWARPLLSHALENEEFEGLTDPRLEKNYVESEMFRMLEAAAACVRHSAAKRPRMGQVVRAFDSMGTSDLSNGMRVGESEVFNSAQQSEEIRWFQRMAFGSQDYSTDFFSQGG* 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2241577 2247262 + Vvi1g217 Vvi1g217 769417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g217 726 CDD STKc_IRAK 408 673 - -
Vvi1g217 726 SUPERFAMILY Protein kinase-like (PK-like) 383 673 IPR011009 -
Vvi1g217 726 MobiDBLite consensus disorder prediction 9 46 - -
Vvi1g217 726 PRINTS Proline rich extensin signature 1 17 - -
Vvi1g217 726 PRINTS Proline rich extensin signature 17 33 - -
Vvi1g217 726 PRINTS Proline rich extensin signature 36 53 - -
Vvi1g217 726 PRINTS Proline rich extensin signature 60 85 - -
Vvi1g217 726 MobiDBLite consensus disorder prediction 1 296 - -
Vvi1g217 726 ProSiteProfiles Protein kinase domain profile. 402 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g217 726 PANTHER BNACNNG34790D PROTEIN 120 724 - -
Vvi1g217 726 ProSitePatterns Protein kinases ATP-binding region signature. 408 430 IPR017441 GO:0005524
Vvi1g217 726 MobiDBLite consensus disorder prediction 54 273 - -
Vvi1g217 726 Gene3D Phosphorylase Kinase; domain 1 381 477 - -
Vvi1g217 726 SMART serkin_6 402 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g217 726 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 120 724 - -
Vvi1g217 726 Gene3D Transferase(Phosphotransferase) domain 1 478 694 - -
Vvi1g217 726 Pfam Protein tyrosine and serine/threonine kinase 404 673 IPR001245 GO:0004672|GO:0006468
Vvi1g217 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Vvi1g217 726 MobiDBLite consensus disorder prediction 274 296 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76496 PF07714 PK_Tyr_Ser-Thr 1.70E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g217 - - vvi:100247397 847.425