Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g219 ATGGCTGGCGGCCGGAGGGCGAAGCTGCATTTGAGCAAGATCTACACATACGCATGTGGGAAAACATCTTTGAAGGGTGATCATGAGCAGATTGGGCAACCCGGTTTTTCCAGGGTAGTTTTCTGCAACGAACCAGATCATTTTGAGGCCAAAATACGTAACTATGCAAACAATTATGTTAGGACTACAAAGTATACGCTAGCAAGTTTCTTGCCTAAATCCTTGTTTGAGCAGTTTAGGAGGGTTGCCAACTTTTTCTTCCTTGTAACCGGCATCTTGTCCTTCACTGATCTCGCCCCTTACTCTGCTGTCAGTGCCGTCCTCCCTCTAGTTATTGTGATTGCAGCCACCATGGTGAAAGAGGGTGTAGAGGATTGGCAGCGAAAACAACAGGATATTGAGGTGAACAATAGGAAAGTTAAAGTGCATGTTGGTGATGGAACTTTTCATGATACTGAATGGAGAAATCTTAGGGTTGGAGATACGAATTTGAAAATGAAACAAGCTTTGGAGGCAACTTCATCCTTAAATGAAGATTCTAACTTCCAGAATTTTAAGGCTGTCATTAAATGTGAAGACCCGAATGCCAATTTAGACTCAAAACTCCGGAATACTGATTACATATATGGGGCTGTCATCTTCACTGGTCATGATACAAAGGTCATTCAAAATTCAACTGATGCTCCCTCAAAGAGAAGCAGAAATGGGAGGATGACAAGGTGGTATCTTAGACCAGACGATACCACTATTTACTTTGACCCCAAAAGAGCACCGGTTGCAGCAATTCTTCACTTCCTGACAGCTGTGATGTTGTATGCATACATGATCCCAATTTCATTGTATACTGATAAACCAGCACATGCCCGTACATCAAATTTGAACGAGGAACTTGGCCAAGTCGACACAATACTTTCTGATAAGACAGGGACTTTGACATGCAACTCAATGGAGTTCATCAAGTGTTCTGTGGCTGGAACAGCTTATGGCCGTGGTGTTACAGAGGTGGAGAGGGCTATGGCAAAAAGAAAAGACGTCATCCAGGGCTTTCTTCGTTTGTTGGCAATCTGTCATACTGCTATACCTGAAGTGAATGAAGTAACCGGGCAGGTTTCATATGAAGCCGAGTCACCAGATGAGGCAGCTTTTGTGATTGCAGCAAGAGAACTTGGTTTTGAGTTCTACAAAAGGACACAAACAAGCATCTCACTCCATGAGTTGGATCCTGTGTCTGGCAAGAAAGTTGAAAGGGTGTACGATCTCCTGAATGTTTTGGAGTTTAACAGCACAAGGAAGCGGATGTCCGTGATTGTGAGAAATGAGGAGGGGAAATTATTATTACTTTGTAAAGGTGCTGATAGTGTCATGTTTGAGAGGCTTGACAAGAATGGTCGGCAGTTTGAAGAGGACACAAGAAACCATGTAAATGAGTATGCTGATGCAGGCTTGAGGACTTTAATACTCGCTTATCGTGAACTTGATGAGGAAGAATATAAAGAGTTCAATAAGAAATTCAATGAGGCCAAGAGCTCGGTTAATGCAGACAGAGAAGCATTGATTGATGAAGTGACAGAGAAAATGGAGAAGAATTTGATTCTCCTAGGCGCAACTGCTGTTGAGGACAAACTTCAACATGGGGTTCCTGACTGCATTGATAAGCTTGCCCAGGCAGGGATAAAGATATGGGTTTTGACAGGAGATAAGATGGAGACTGCCATCAATATTGGTTTTGCTTGTAGTTTGCTTCGACAAGGAATGAAGCAGATAATAATCAGTTTGGAGACACCTGACATTAAAGCTTTGGAAAAAGTGGGAGACAAGGCTGTTATCATAAAGGCATCAAAAGAAAGTGTCGTCCACCAGATAGCAGCAGGGAAAGCCCAGGTTACTGCATCTAGTGGAAGCTCTGAGGCATATGCTTTGATCATTGATGGGAAATCACTGGCATATGCACTACAAGATGATGTCAAAAACTTGTTCCTTGAGCTTGCAATTGGGTGTGCTTCCGTTATTTGCTGTCGTTCATCACCAAAACAGAAGGCGCTGGTTACACGTCTGGTTAAACTTGGAACTGGGAAGACAACACTAGCAATTGGTGATGGCGCCAATGATGTGGGAATGCTTCAAGAAGCCGACATTGGGATTGGAATCAGTGGTGTTGAAGGGATGCAGGCAGTCATGTCAAGTGATATTGCGATTGCTCAGTTCCAGTATTTGGAGCGTTTGCTACTAGTCCACGGACATTGGTGTTATAGAAGGATCTCATTAATGATATGCTACTTCTTCTACAAGAACATCACATTTGCTTTTACTCTCTTCTTATATGAGGCACATGCGTCATTCTCTGGGCAACCTGCATACAATGATTGGTTTATGACGTTTTATAATGTGTTCTTCACATCACTTCCACCAATTGCTTTGGGTGTTTTTGACCAAGATGTCTCAGCACGGTTTTGTCTCAAGTTTCCTCTACTGTACCAAGAAGGAGTGCAGAATGTTCTTTTCAACTGGCGTCGAATACTCAGCTGGATGTTCAATGGGGTATACAGTGCCATCATAATCTTCTTCTTCTGCATAAAGGCACTGGACTCCGAGGCCTTCAATAGCGGGGGGAAAACTATGGCCCTTACTATAAGTTACTTCACCTTGATACAACATATCTTCATCTGGGGAAGTATTGCTCTCTGGTATCTTTTCCTCCTAGTATTTGGAATCATGTCTCCCTCCATTTCTTCCACGGCTTACAAACTTTTTATTGAAGCCCTTGCCCCAGCCCCCACCTTTTGGATTGTCACTCTCTTCGTGAGGTCCTTGCGGCCACAGACTGTTGGTGTATCAGCACGTAGAGTGGCTAGAACTCATAGATAA 2865 43.25 MAGGRRAKLHLSKIYTYACGKTSLKGDHEQIGQPGFSRVVFCNEPDHFEAKIRNYANNYVRTTKYTLASFLPKSLFEQFRRVANFFFLVTGILSFTDLAPYSAVSAVLPLVIVIAATMVKEGVEDWQRKQQDIEVNNRKVKVHVGDGTFHDTEWRNLRVGDTNLKMKQALEATSSLNEDSNFQNFKAVIKCEDPNANLDSKLRNTDYIYGAVIFTGHDTKVIQNSTDAPSKRSRNGRMTRWYLRPDDTTIYFDPKRAPVAAILHFLTAVMLYAYMIPISLYTDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMAKRKDVIQGFLRLLAICHTAIPEVNEVTGQVSYEAESPDEAAFVIAARELGFEFYKRTQTSISLHELDPVSGKKVERVYDLLNVLEFNSTRKRMSVIVRNEEGKLLLLCKGADSVMFERLDKNGRQFEEDTRNHVNEYADAGLRTLILAYRELDEEEYKEFNKKFNEAKSSVNADREALIDEVTEKMEKNLILLGATAVEDKLQHGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIISLETPDIKALEKVGDKAVIIKASKESVVHQIAAGKAQVTASSGSSEAYALIIDGKSLAYALQDDVKNLFLELAIGCASVICCRSSPKQKALVTRLVKLGTGKTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFQYLERLLLVHGHWCYRRISLMICYFFYKNITFAFTLFLYEAHASFSGQPAYNDWFMTFYNVFFTSLPPIALGVFDQDVSARFCLKFPLLYQEGVQNVLFNWRRILSWMFNGVYSAIIIFFFCIKALDSEAFNSGGKTMALTISYFTLIQHIFIWGSIALWYLFLLVFGIMSPSISSTAYKLFIEALAPAPTFWIVTLFVRSLRPQTVGVSARRVARTHR* 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2253558 2261347 - Vvi1g219 Vvi1g219 769419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g219 954 Gene3D - 534 737 IPR023214 -
Vvi1g219 954 Gene3D - 373 533 IPR023299 GO:0000166
Vvi1g219 954 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 663 776 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi1g219 954 PRINTS P-type cation-transporting ATPase superfamily signature 304 318 - -
Vvi1g219 954 PRINTS P-type cation-transporting ATPase superfamily signature 697 716 - -
Vvi1g219 954 Pfam Phospholipid-translocating P-type ATPase C-terminal 725 872 IPR032630 -
Vvi1g219 954 SUPERFAMILY Calcium ATPase, transmembrane domain M 49 934 IPR023298 -
Vvi1g219 954 SUPERFAMILY HAD-like 299 752 IPR036412 -
Vvi1g219 954 SFLD C1.7: P-type atpase like 286 748 - -
Vvi1g219 954 ProSitePatterns E1-E2 ATPases phosphorylation site. 306 312 IPR018303 -
Vvi1g219 954 Pfam Cation transport ATPase (P-type) 367 459 - -
Vvi1g219 954 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 341 934 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Vvi1g219 954 Pfam Phospholipid-translocating ATPase N-terminal 40 106 IPR032631 -
Vvi1g219 954 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 310 546 IPR023299 GO:0000166
Vvi1g219 954 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 9-RELATED 160 234 - -
Vvi1g219 954 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 9-RELATED 235 934 - -
Vvi1g219 954 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 9-RELATED 2 161 - -
Vvi1g219 954 SFLD p-type atpase 286 748 IPR044492 -
Vvi1g219 954 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 160 234 - -
Vvi1g219 954 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 235 934 - -
Vvi1g219 954 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 2 161 - -
Vvi1g219 954 CDD P-type_ATPase_APLT_Dnf-like 57 857 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g219 Vvi17g387 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g219 K01530 - vvi:100256123 1766.9