Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g220 ATGGTTTCGGAGGGGAAGAGTGGAAGATGTCATTTGGGTGGTGAGGCTGATGCCGAGGCAGTGCTCAACTTGTTGAGTGAGGAAGTGAGTGAGAGATGTTATGGTGCTAGAGAGACACATGGGAGTTCGTATGAAAGAGTGCGAGCGGAGAAGAGAGGCGATTTGGGTAATGAATGTTACAGGAGAAAGAAGAAAAATGTTGGGTTGGGTTCTTTGGAGTGCAGTTCAAAGCGTGAATCTCAGTCAATTATAGTTGGGTCAAGGGAAGAGGGTCATAGAAGGAGAGAGGAAAAGGAAGCTTCTGTGAGAATTGAAAATCGGGGGCTACGGAAAGAAGGTTCTAGTTGTTCATCTTATTACTCACTTTCATCTTTGGGTGACTCTGAGAGCAACACGGGCGATATTGAAGGCAACCAAGAAGCTCCGTGGGAGAGGAGAAAGAAGTCCGAGAAGAAGCTTGCTGAAGTATCAATCGAGCGAACTGAATCTATGGAGGAAACCTCAGAAATGGATTCAAAAGTATCACAGATCCATGAAAGCGGTTTTGGAAAGTCTTCTGGCTACCGCAAGCAATTCCATGGCAGGGGAGAGAAGTTGACTGTGGCAGGGAATTTAGACGAGGAAACAAGAAAGCAATATGGTCAGAAAGGTAAACTTGTCATTGGACAGTCAGAGTCTGGAAGAAAATACCAAAGGCTAACTGAATCGTCAGAAGTCCAGGGTAGTGATGTTGAAAGAACTTCTGGATCTCAGAAGCAATTCAGTGGCAGTGAAGAAAATGTAACCACTGCTAAGAATTTGGTCCAGGGAAGAGGAGAAGAACATGGTAAAAAAGATGCCCATATCACTGTCCAAGACAAATTAAAAAGAAACTCTCAGCAGTTCAGTGAAACATCGAGGACTCAAGAGGTAGATGTCAGAAATACCTCCACTTCTCTGAGGCAGTCAGGAACCACAATGAAGAACTGGAATGAAAATTCAACTTCATTCCTGGGCTCGGTTCAGGAGACAAAAGGGCAACAGCACCAAACAGGCGAATGGATCACTGGAGGAATTAACTCTAGAAGAAATTTTCAACAATTCACCGAGATCTCAGATATTCATGATAGTGATATCCGTAACAATAGCATTTCACAGACACAATATGAAACTAGAATGAACAAGCAGGAAGGAAATTGGAACTTGGTTTCCAGTTCACATCCAGAAGCAAAAGAGCAGCACTTGCAAACAGATAAAACAACTATTAGGAGAAATGAGTCCAGAAAAGGATACCAAGATGCCACAAGCATGTCAGTGGTTCATGCTAGTACTACTGAAACAGGTGCCAACCCTCAAAGGACTTCTGAAAAGAGAGTGAGCAATCAAGAAGTTAATTTGACGTCAGTTGTGAAATCAGTTGAGGAAACGAGAGAAAGATATTATCAAGCTGATGAAAGATTGGTGCAAACTAGATCAAGAGAAGAGGTTGAAAAGCCTTCTAAACAATTGCATTTTATTGAGTCTGCACCAGGGGATTCCTCCAGTTCCCAAGCATCTCTGAATTTGGTAGCCCAGGCTAGAGTGCAACAAATTGCTGCAGAGGAAAGAGATAAGACAAGTTCACAGGCAACATTGAAGCCTCCACCATTTCAGTCGGTAGAAAGAGGTCCACTGCATGTGGAACTGACTTCTGGCTTTGCAGCTCAAGAGGTTTCTGGTGAAACTCCAGAAAGTGGCTTTAGTGCCTCATCTACACTCCCTCCAACGAGAAGTCCAACTTGGCAGCGGGAACCACATGGTGAAGCTAGAAGAGGTGAAACTTATGGGGAGCCTCTGAATGTTGCCCCTGGAGATGTATTGGCTTCAGCTGATCGTTTAGAGAAATCCTCCATGCACTTTGTGGGAGAGTTTGTTGAGAAGGTAAGGCATGATGTGTTCACATCTGAAATCCAAAAAGAGAGAGGTTCGAGTCATTATGGTTCTGAAAACTTGCAGTTGAAGGAGCATGACTCAAGGCGTTCATCTGGGGCTTCTGGAACAAAGGGGCCTTCTGACGAAATGTGGGATGTAGCAAATCCTTCTCTTCAGGAACCTCCCAAGACAGAAGCAGAAGAGGGCACTACAACAACTGGGACTGCCATCGTAAGGAGAACTGGAAGGTCCTTTTGGAGTGTCATTGCAGACATAGTCCGAATGCGGTGGGTCTCACATTCTGAAACCCATAATTCAGCCATGAAGTCGGGTGGAAGGAGTTCATCAAATGAGTCTGCTGGCAGTGATGCATGGTTTTCTGGTCGTGAGCCAGATGAGCACAATGACGAGAATGCAAAAAGGGAAAAAAGAAGCGTGCAACAAGAATCCATATCTAATGATCAGCCTCAACTGGGAAAAACTCCCACTCTAAATCAAGGAGAAGGGTCTCAAGCAACAAGCACAAAGGACCAAAAAAAGCATGCTGAACTGGACATGCCATCTTCTAGTATTTTAGAAAGTGGCTTAGTGCTCAAAAGCAATTCCTCTGCATCTGGGAAGGAAAGTCTTGGTTGGTATGAAAATGCAGAGAGTTTTCAAGGTTCCCCTTCAAGCTCTGCAGTAGTGGAATCAGCGTTACCAACACCCGGTAGGGACATAAGAAGATCTCCCACTGTGGAAGAAATCTCAAGTAGTACTAAACCTGTTGGATCTGGAAGTGGCTCAATGGAGGGGATGGATCAAAAAGCTGATGTACCATTGACTGAAATGTCAGGGACTGAGGGGAAAGATGGGGAGTTGAAAAGGAGAAAACTTCAAAGGAACAAGCAGGTATTGAAAGATCAATTTGATGAATGGGAAGAGGCATATGTACTTGAGAATGAGCAGCGTAAGATTGATGAAATGTTCATGAGGGAAGCATTGTTGGAAGCCAAAAAGGCTGCCAATGCTTGGGAGGTGCCTGTTGGGGCTGTGCTGGTACAGCATGGCAAAATTATCGCCCGTGGATGTAACCGAGTGGAAGAGTTAAGGGACTCAACTGCCCATGCAGAAATGATTTGTATACGGGAGGCTTCAAACCTACTCCGGACATGGAGGCTTTCGGAGACTACACTTTATGTAACACTCGAACCATGTCCTATGTGTGCTGGAGCAATACTACAAGCTAGAATTGACACCCTTGTGTGGGGAGCTCCCAATAAACTTCTTGGGGCTGATGGCAGCTGGATTAGACTTTTTCCTAATGGGGGTGAAGGTGGAAGTGGCTCAGAACTGACAGATAAAACACAAGCTCCAGCCCACCCATTCCACCCAAAGATGACAATTCGGCGTGGGGTATTGGCATCAGAATGTTCAGATGCAATGCAGCAGTTCTTCCAACTCAGGAGAAAGCAGAAGGAGAAGAAACCAGATATGCCCGCCCCACCTTCATGCTTGCCCATTTCAAATCATCCTTCTAAGTTCATGACTAAGATGCATGGCATCTTCCACATGTTCTGTTTATAA 3456 44.88 MVSEGKSGRCHLGGEADAEAVLNLLSEEVSERCYGARETHGSSYERVRAEKRGDLGNECYRRKKKNVGLGSLECSSKRESQSIIVGSREEGHRRREEKEASVRIENRGLRKEGSSCSSYYSLSSLGDSESNTGDIEGNQEAPWERRKKSEKKLAEVSIERTESMEETSEMDSKVSQIHESGFGKSSGYRKQFHGRGEKLTVAGNLDEETRKQYGQKGKLVIGQSESGRKYQRLTESSEVQGSDVERTSGSQKQFSGSEENVTTAKNLVQGRGEEHGKKDAHITVQDKLKRNSQQFSETSRTQEVDVRNTSTSLRQSGTTMKNWNENSTSFLGSVQETKGQQHQTGEWITGGINSRRNFQQFTEISDIHDSDIRNNSISQTQYETRMNKQEGNWNLVSSSHPEAKEQHLQTDKTTIRRNESRKGYQDATSMSVVHASTTETGANPQRTSEKRVSNQEVNLTSVVKSVEETRERYYQADERLVQTRSREEVEKPSKQLHFIESAPGDSSSSQASLNLVAQARVQQIAAEERDKTSSQATLKPPPFQSVERGPLHVELTSGFAAQEVSGETPESGFSASSTLPPTRSPTWQREPHGEARRGETYGEPLNVAPGDVLASADRLEKSSMHFVGEFVEKVRHDVFTSEIQKERGSSHYGSENLQLKEHDSRRSSGASGTKGPSDEMWDVANPSLQEPPKTEAEEGTTTTGTAIVRRTGRSFWSVIADIVRMRWVSHSETHNSAMKSGGRSSSNESAGSDAWFSGREPDEHNDENAKREKRSVQQESISNDQPQLGKTPTLNQGEGSQATSTKDQKKHAELDMPSSSILESGLVLKSNSSASGKESLGWYENAESFQGSPSSSAVVESALPTPGRDIRRSPTVEEISSSTKPVGSGSGSMEGMDQKADVPLTEMSGTEGKDGELKRRKLQRNKQVLKDQFDEWEEAYVLENEQRKIDEMFMREALLEAKKAANAWEVPVGAVLVQHGKIIARGCNRVEELRDSTAHAEMICIREASNLLRTWRLSETTLYVTLEPCPMCAGAILQARIDTLVWGAPNKLLGADGSWIRLFPNGGEGGSGSELTDKTQAPAHPFHPKMTIRRGVLASECSDAMQQFFQLRRKQKEKKPDMPAPPSCLPISNHPSKFMTKMHGIFHMFCL* 1152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2273538 2280301 + Vvi1g220 Vvi1g220 769420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g220 1151 MobiDBLite consensus disorder prediction 481 511 - -
Vvi1g220 1151 Gene3D Cytidine Deaminase, domain 2 937 1123 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 424 456 - -
Vvi1g220 1151 Coils Coil 942 962 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 270 286 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 563 608 - -
Vvi1g220 1151 PANTHER TRNA(ADENINE(34)) DEAMINASE, CHLOROPLASTIC 685 1142 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 71 102 - -
Vvi1g220 1151 CDD nucleoside_deaminase 954 1061 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 734 818 - -
Vvi1g220 1151 Hamap tRNA-specific adenosine deaminase [tadA]. 954 1113 IPR028883 GO:0002100|GO:0008251
Vvi1g220 1151 MobiDBLite consensus disorder prediction 779 803 - -
Vvi1g220 1151 SUPERFAMILY Cytidine deaminase-like 930 1116 IPR016193 GO:0003824
Vvi1g220 1151 Pfam MafB19-like deaminase 951 1050 IPR028883 GO:0002100|GO:0008251
Vvi1g220 1151 MobiDBLite consensus disorder prediction 757 778 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 734 753 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 524 546 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 847 897 - -
Vvi1g220 1151 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 685 1142 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 287 324 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 211 324 - -
Vvi1g220 1151 Coils Coil 919 939 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 642 706 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 123 137 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 847 861 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 481 495 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 123 196 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 563 585 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 139 173 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 83 102 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 227 267 - -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 400 456 - -
Vvi1g220 1151 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 948 1070 IPR002125 -
Vvi1g220 1151 MobiDBLite consensus disorder prediction 404 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g220 K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] - vvi:100259373 2048.09
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32