Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g23 ATGGCTGTTCTCAAGTGTAATGATCATTTTGTGCGCCACTTACAAGTGGAACTCCTGGGCCTCCTCTTCTATTTTGGAATAGAGTCTCCAGGTTATCATTACCATGAGAGGTGTGGGGTCTTTGTCCAGCAAATGCTCACATTGTATCAGAGTAATTTTATTTACCTCAATCATGTGAGACGTTACTACGTAGTGAGGACTGAGGACCTATTGGACCCGAGTAGACAAAATATTCTATTTTCCGCCCATAGTCTGACTGAATATATATTCTCCATGTTAAAACCGTTTTCGAGAATGGTTTCCATCGTAAGGCGCGCTATGAACAACACTGATACAAACTTGGTGCTCTTCCGCATCCTTGCTTCAATCCATGCCATCTCCATTGTCATCGCTGTCACAGCTTCATCATCACCCTACACTCCCGTGGAGAACATAGCTCTAGATTGTGGAAGCCATGGCCACAGCACCGCCCCTGATGGCCGCAAATGGACTAGTGACACCGGTTCAAAATTCATATGCTCCCAACTCAATGCATCTTCCATCTCCATGGCCTCCACCCAAGACTCCGTTCCACTGGTTCCTTACATGACTGCTCGTATCTTCACCTCCCAATTCACTTACGCCTTCCCGCTATCCCCGGGCCCCAAGTTCCTTCGCCTTCACTTCCATCCGGCCTCCTACTCCAATCTCGATCCCTCCCACGCCTTCTTCTCCGTCACGGCAAACCACTACACGCTGCTTCACAACTTCAGCGCTTGGCTCACTGCTGGCTTTCTTAATCAAACCCATTTCAGTAAGGAGTATTGTGTTTGGGTGAGCTCGGAGCAGCTGCTGAATCTCACTTTCGCTCCAGTTGCAGGTGCTTTTGCCTTTGTGAATGGCATCGAGGTTGTTTCCATGCCCACGGATCTTTACCTCAAAGGTGAAGATATCTCCATGGCTGGGCAATCGCAGCCATTCACGATCAACAATGGCACTGCACTCGAGATGGTTTATAGATTAAACGTGGACGGGCAAGCCATTTCGGCCGTCGACGACACCGGCATGTTCCGAGAATGGTCTCAGGACGACTCCTTTATCTTCGGACCCGCAGCTGGGCAAGATCCATTTCATCTCACAATTAAGATCAAATTCACCAAGGTTCCACCCTATACTGCGCCTGAGATTCTCTACAGGACTGCTCGCTCCATGGGGATGAACAGGAATGTCAACGAGAACTACAATCTGACGTGGATATTCCCCGTGGATTCAGGGTTTTACTATCTGGTGAGGCTCCATTTCTGCGAGATTGCGCCGGAGATAACTGGGATCAATCAGAGGGTGTTTGAGATATTTTTGAATAACCAGACGGCCGACGATCAGATGGATATTATGGTTTATGCCGATGGTATCGGAGTACCGATTTTCAGGGAATTCGTGGTGATAGTGCCGGAAGCAGGGGGAATATTCAAATTGAACGCAAGCGACGGAAACCTCGCCGGACCCAATCCTATCCCTAAACATAAGTCTAAAGCCGAAGTGGATCAAATTGAACCCATTCAAACGGCGGATCGTTGGAATAAGGTCCGAAAACCATTGATTTTCGCCGGAGCAAGGACTGCAGGCACGAGCCGAGGAACATCCTGGCATTTTTCGCTGGAGGAGATGCTTTCAGCGACGAACGACTTCAGCGACGATTTCCTCATCGGCGTCGGCGGCTTCGGAAACGTCTACAGGGGCGCCATCCACGGCGGAGCAACCCCAGTCGCGGTGAAACGATTGAACCCCACAGACGTGAAGACCGCCAACATACTGCTTGATGAGAACTGGGTGGCGAAGGTCTCTGATTTCGGATTATCAAAGTTGGGACCCGCCGGCGGGTCCGAGAGCCACGTTCTGTGCGGCAGACCGCCGGTGGAAAAGCACCTAGAGGGGAGAGAGGCGAGCTTGGTGGAGTGGGGAAAGGCCCACTACAAGAGCGGGAGGCTTGAGGAGATCGTGGACAATCGGGTGAGGAATGAGATTGGGGCGGAGTGTCTAAGGAAGTTTGGGGAGATAGCGACAAGCTGCGTGGGGGATCGGGGGACGGAGCGGCCGGCGATGGGTGATGTGATGTGGGGGCTTGAATTCGCGATGCAGTTGCAGAAGAAGAGCGGGGAGGTAAGTGAGATAGAAGAAGGATTGGAGGGTGAAAGGAGGTGGAATGGGCATGGTGGGGGTGGGGGTGGGGGTGGAGGTGGTGGAGGTGAATCCACATTGGGGATGTCCGGAGATGTCTTCTCTGAGATCAGAAATCCCCAAGGCCGATAA 2289 51.55 MAVLKCNDHFVRHLQVELLGLLFYFGIESPGYHYHERCGVFVQQMLTLYQSNFIYLNHVRRYYVVRTEDLLDPSRQNILFSAHSLTEYIFSMLKPFSRMVSIVRRAMNNTDTNLVLFRILASIHAISIVIAVTASSSPYTPVENIALDCGSHGHSTAPDGRKWTSDTGSKFICSQLNASSISMASTQDSVPLVPYMTARIFTSQFTYAFPLSPGPKFLRLHFHPASYSNLDPSHAFFSVTANHYTLLHNFSAWLTAGFLNQTHFSKEYCVWVSSEQLLNLTFAPVAGAFAFVNGIEVVSMPTDLYLKGEDISMAGQSQPFTINNGTALEMVYRLNVDGQAISAVDDTGMFREWSQDDSFIFGPAAGQDPFHLTIKIKFTKVPPYTAPEILYRTARSMGMNRNVNENYNLTWIFPVDSGFYYLVRLHFCEIAPEITGINQRVFEIFLNNQTADDQMDIMVYADGIGVPIFREFVVIVPEAGGIFKLNASDGNLAGPNPIPKHKSKAEVDQIEPIQTADRWNKVRKPLIFAGARTAGTSRGTSWHFSLEEMLSATNDFSDDFLIGVGGFGNVYRGAIHGGATPVAVKRLNPTDVKTANILLDENWVAKVSDFGLSKLGPAGGSESHVLCGRPPVEKHLEGREASLVEWGKAHYKSGRLEEIVDNRVRNEIGAECLRKFGEIATSCVGDRGTERPAMGDVMWGLEFAMQLQKKSGEVSEIEEGLEGERRWNGHGGGGGGGGGGGGESTLGMSGDVFSEIRNPQGR* 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 334517 337539 - Vvi1g23 Vvi1g23 769223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g23 762 Pfam Malectin-like domain 147 489 IPR024788 -
Vvi1g23 762 Gene3D Transferase(Phosphotransferase) domain 1 623 718 - -
Vvi1g23 762 Gene3D Phosphorylase Kinase; domain 1 542 608 - -
Vvi1g23 762 PANTHER GPCR KINASE, MITOGEN-ACTIVATED PROTEIN (MAP) KINASE KINASE KINASE 7-RELATED 541 589 - -
Vvi1g23 762 PANTHER GPCR KINASE, MITOGEN-ACTIVATED PROTEIN (MAP) KINASE KINASE KINASE 7-RELATED 591 625 - -
Vvi1g23 762 PANTHER GPCR KINASE, MITOGEN-ACTIVATED PROTEIN (MAP) KINASE KINASE KINASE 7-RELATED 134 481 - -
Vvi1g23 762 PANTHER GPCR KINASE, MITOGEN-ACTIVATED PROTEIN (MAP) KINASE KINASE KINASE 7-RELATED 625 714 - -
Vvi1g23 762 ProSitePatterns Peroxidases active site signature. 214 225 IPR019794 GO:0004601
Vvi1g23 762 PANTHER OS07G0166700 PROTEIN 134 481 IPR045272 GO:0004714|GO:0006468
Vvi1g23 762 PANTHER OS07G0166700 PROTEIN 591 625 IPR045272 GO:0004714|GO:0006468
Vvi1g23 762 PANTHER OS07G0166700 PROTEIN 625 714 IPR045272 GO:0004714|GO:0006468
Vvi1g23 762 PANTHER OS07G0166700 PROTEIN 541 589 IPR045272 GO:0004714|GO:0006468
Vvi1g23 762 Gene3D - 326 513 - -
Vvi1g23 762 Gene3D - 144 302 - -
Vvi1g23 762 SUPERFAMILY Protein kinase-like (PK-like) 542 699 IPR011009 -
Vvi1g23 762 MobiDBLite consensus disorder prediction 723 762 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g23 - - - vvi:100242441 1050.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g23 Vvi14g1013 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g23 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000185 5 9 8 5 3 2 4 2 4 7 4 2 8 4 1 8 2 3 4 3 6 2 1 1 4 7 1 3 2 5 120