Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g240 ATGATGCCACCTGAGCAGGAGACCAGGATCACCGGTGACCCAGCTAATGTTCTGGGGGCGAACCGGATCGAGAATGTCACAATTCATGCTGCAGAGCCAGCGAGTAATGTGAGCCCGTGTTTAGAGGATCAAACACCTGACGGACAGCAAACAACCAGACCTCAATTTTCGATTCTACGTGAATCATTACGTCCTGTGACACTCAAGTTTGAGGATGTGGTTTATGTTATCAAGTTGAGAAGCACCGAAGGCAGCTGCTTTGGGTCACCTGAGCCCAAGCAAAGTCGCACTGTGCTCAATGGGGTGAGCGGAATAGCTCGACCAGGTGAACTGCTGGCAATGTTGGGTCCATCAGGCAGTGGAAAAACCACTCTCCTCACGGCTCTGGCTGGCCGATTACCGGGGAAAGTCTCAGGTAACATAACCTATAACGGGCAGCCATTTTCAAGCTCCATGAAGCGGAAGACGGGGTTTGTCACACAAGATGATGTACTCTACCCTCACCTGACCGTCCTCGAGACCTTAACATATGCGGCCTTGTTAAGGCTCCCGAAAAAGCTCACTAGAGAGGAAAAAATCGAACAAGCTGAGCTGATCATCGTGGAGCTTGGCTTAACAAGATGCAGGAACAGTGTCATAGGGGGTCCTCTCCTCCGGGGGATATCGGGTGGTGAGCGCAAAAGGGTGAGTATTGGGCAGGAGATGCTAGTGAACCCCAGCCTATTGTTGCTGGACGAGCCCACTTCAGGGCTCGACTCAACCACCGCTCACCGCATAGTGGCCACTCTTCGGGGACTGGCACAAGGCGGGCGGACGGTGATTACAACCATTCATCAGCCTTCAAGCAGGCTGTATAGGACGTTTGATAAACTGGTGGTGCTCTCAGAAGGGTGTCCTATTTACAGTGGAAATGCTGCTAATGTTCTGGAGTACTTCGGCACAATTGGTTACCTGCCTGGATTTAGCTTATTGAACCCTGCTGATTTTCTACTTGATCTCGCTAATGGTGTAGCCCCTGATGTGAGAAAGGATGATCAACAGGACTTTCATGGTAGACCAGACCATCATGATGATCAAAATTCCATCAAACAGGCCCTGATATCATCTTACAAGAAGAGCCTATATCATATCATGAGGGCTGAGATCCATCGTAATTCTCATGGTTCAGATGGGTCTGCATCGGGACCATTGTCATCTAGAGGTTGTGAGAATCAATGGACCTCCAGCTGGTGGGAGCAATTCAAGGTGTTGCTAAGAAGGGGTTTGCAAGAGAGGAAACATGAATCTTACTCTGGTTTGAGAATTTTTCAAGTCATGTCTGTTTCAATTCTTTCGGGGCTTTTGTGGTGGCATTCTGATACTTCCCACATACAAGATCAGGTGGGACTTCTCTTTTTCTTCTCCATATTCTGGGGCTTCTTTCCTCTATTCAATGCCATATTCACATTCCCTCAGGAGCGGCCAATGCTAATAAGAGAACGCTCATCGGGCATGTACCGTCTCTCCTCATATTACTTTGCTAGAATGGCTGGTGACTTGCCTATGGAACTTGTGCTCCCAACTATCTTCGTAACCATCGCATATTGGATGGGTGGTCTCAAGCCTTCCCTGCTTACATTTGTGCTAACCCTCTTGGTCATCCTATACAATGTGCTAGTCTCTCAAGGGCTAGGACTAGCCCTTGGTGCCATTATAATGGACGTGAAACAGGGCACGGCCTTAGCTTCTGTGACCATGCTTGTGTTTCTTTTAGCAGGAGGATACTACATTCAGCACATCCCACCTTTCATTGCTTGGTTGAAGTACATCTCCTTTAGTCACTACTGTTATAAGCTTCTAGTGGGAGTGCAGTACGCAGAAAATGAGGTTTATGAGTGTGGGTTGAGGATGCATTGCAAGGTGTGGGAATTTCCTGCTATAAAGTATCTGGGTATTGATCATTGGGCTTGGGATGTGGCTGCCTTGACTGTAATGTTTGTGGGATATAGGGCTTTGGCTTATGCGGCATTGAGGATGGGGCAACATCACTGA 2031 48.3 MMPPEQETRITGDPANVLGANRIENVTIHAAEPASNVSPCLEDQTPDGQQTTRPQFSILRESLRPVTLKFEDVVYVIKLRSTEGSCFGSPEPKQSRTVLNGVSGIARPGELLAMLGPSGSGKTTLLTALAGRLPGKVSGNITYNGQPFSSSMKRKTGFVTQDDVLYPHLTVLETLTYAALLRLPKKLTREEKIEQAELIIVELGLTRCRNSVIGGPLLRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAHRIVATLRGLAQGGRTVITTIHQPSSRLYRTFDKLVVLSEGCPIYSGNAANVLEYFGTIGYLPGFSLLNPADFLLDLANGVAPDVRKDDQQDFHGRPDHHDDQNSIKQALISSYKKSLYHIMRAEIHRNSHGSDGSASGPLSSRGCENQWTSSWWEQFKVLLRRGLQERKHESYSGLRIFQVMSVSILSGLLWWHSDTSHIQDQVGLLFFFSIFWGFFPLFNAIFTFPQERPMLIRERSSGMYRLSSYYFARMAGDLPMELVLPTIFVTIAYWMGGLKPSLLTFVLTLLVILYNVLVSQGLGLALGAIIMDVKQGTALASVTMLVFLLAGGYYIQHIPPFIAWLKYISFSHYCYKLLVGVQYAENEVYECGLRMHCKVWEFPAIKYLGIDHWAWDVAALTVMFVGYRALAYAALRMGQHH* 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2429293 2433043 - Vvi1g240 Vvi1g240 769440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g240 676 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 35 673 - -
Vvi1g240 676 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 317 IPR027417 -
Vvi1g240 676 MobiDBLite consensus disorder prediction 38 53 - -
Vvi1g240 676 Pfam ABC transporter 99 249 IPR003439 GO:0005524
Vvi1g240 676 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 68 321 IPR003439 GO:0005524
Vvi1g240 676 ProSitePatterns ABC transporters family signature. 221 235 IPR017871 GO:0005524
Vvi1g240 676 Gene3D - 86 315 IPR027417 -
Vvi1g240 676 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 35 673 - -
Vvi1g240 676 SMART AAA_5 108 298 IPR003593 -
Vvi1g240 676 MobiDBLite consensus disorder prediction 34 53 - -
Vvi1g240 676 Pfam ABC-2 type transporter 412 618 IPR013525 GO:0016020|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g240 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - vvi:100255890 1338.94
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g240 . Blo16g01044 . . Bpe13g01320 . . . Cmo04g01619 . . . Car04g01598 . . . Cpe01g01375 . . . . . . . . . . . . . . Cone13ag0868 . Cone6ag0480 . . . . . . . . . . . . Bma06g00780 . . . . Cma15g01421 . . Cpe13g00026 . Bhi12g01423 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79