Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g246 ATGTTTACGCCTCAGAGGAAGGCGTGGACTGGTTTATCGCTCACGCCAAGAAGCGAGGCTCAGAAGAGCGGTGGTGGGGCGGTTTCGAATCCTGTAAACGGCGGAAAGGGGAAATCTGTGGCCTTTGTGGATGGGCCACCGCCTCCGTTGGGTTCTTTGAGTGGAAAGGCGATGTTAACAGGGATTGATGGCGGTGACATGGAAGATTGGAGGCGGTTAAGGGAGGCGGGGTTGTTGGACGAGGCGGCGATGGAGAGGAAGGACAGAGAAGCGCTTGTGGAGAAGGTTTCAAAACTCCAAAACGAGCTTTTTGATTACCAGTATAGCATGGGACTTCTCTTAATCGAGAAGAAGGAATGGACTTCTAAGTATGAAGAACTCAGCCAAGCATTAGCAGAAGCACAGGAGATCCTCAAGCGTGAGAAGTCGGCACATTTCATTGCGATATCTGAAGTTGAGAAGCGAGAGGAGAATTTGAGGAAAGCTTTAGGCGTTGAGAGGCAGTGTGTGGCTGAGCTTGAGAAGGCTTTAGGTGAAATCCATGCAGAGCATTCACAAATCAAGCTTTCATCTGAGACAAAGTTGTCTGATGCTAACGCTTTGGTAGCCAAAATTGAAAAGAGATCTTTGGAGGTGGAAGAAAAGTTGCTTGCTGCTGATGCCAAGCTTGCGGAGGCCAGTAGGAAGAGTTCAGAGTTGGAGAGGAAATTGCAAGAGGTTGAGGCTCGTGAAAGTGTTCTTCGAAGGGAGCGTCTATCCTTAAATGCAGAGCGAGAAGCACATGAAGCAACTTTCCACAAACAAAAAGAAGATTTAAGGGAGTGGGAGAGGAAACTACAGGAAGGGGAAGAGAGGCTATGTGAGGGTCGGAGAATCATCAACCAGAGAGAGGAAAAGGCAAATGAGATTGACAGGACTCTTAAGCTGAAAGAGAGGAATCTTGAAGAGGCACAGAAGAAGATTGATTTAGACAGCTTAAATGTAAAAGTCAAGGAAGATGATATAAATAATAGATTAGCAGAGTTAACTGTGAAGGAGAAACAAGCTGAATCTATGAGAGGCATTCTTGAAGTGAAAGAGAAGGAATTAATTGTGTTGCAAGAAAAACTTAGCGCTAGAGAAAGAGTGGAGATTCAGAAGCTCCTGGACGAGCACAGGGCTATCCTTGATACAAAGAAGCAGGAGTTTGAGTTGGAAATGGAACAAAAGAGAAACTCTGTTGATGAAGAATTGAGAAGCAAGGTACATGAAGTGGAGCAGAAGGAAGTTGAAGTCCTCCATAGGGAGGAAAAGCTAGGAAAACGAGAGCAAGCTTTAGAAAAGAGATTGGAGAGAGTCAAGGAGAAGGAGAAGGAGCTTGAAGCAAAGTTGAAAACATTGAAGGAGAAAGAGAAGTCCCTCAAAGCTGAGGAGAAAAGGGTAGAGGGGGAAAAGAAGCAAATGCTGGCTGATAAAGAGAGTCTGCATCTTCTCAAAGATGAGCTTGAGAAGATAAGGGCTGATATTACTGAACAAGAACTGCAGATTCATGAAGAGACTGAAAGACTCAAAGTAACTGAAGAAGAGAGGTCAGAACATCATCGGTTGCAATTGGAATTGAAACAAGAGATAGACAAATGCAGACATCAGGAAGAGATGCTTCAGAAGGAACGTGAAGATCTGAAGCAGGAAAGGATTATGTTTGAGAAAGACTGGGAAGCCTTGGATGAGAAAAGAGCTGTGATTACTAAAGAGATGAGGGAAATTGGTGACGAGAAAGAAAAATTAGAAAAACTGCATCTCTCTGAAGAAGAAAGGTTAAAAAAGGAGAAACTTGCAATGGAGGAACATATTCAGAGGGAGTTGGAAGCTGTCAGGATAGAAAAAGAATCATTTGCAGCCATAATGAAGCATGAGCAGTTGAGAAAAAGGGATCTTGAGATTGAAATGCAGAATAGGCAGGATGAAATACAGAAACGCTTGCAAGAAAGGGAGAGAGCATTTGAAGAGGAAAGGGAGAGAGAACTTAACAATATTAATCACTTGAAGGAAGTTGCTCGACGGGAAATTGAAGAAATGAAAACAGAAAGGCGTAGAATAGAAAAGGAAAAGCAGGAAGTTTTGTTAAACAAAAGGCAGCTGGAAGGACACCAACTTGAAATGCGTAAAGACATTGATGAGCTTGGTATTCTTAGCAGGAAGCTCAAAGATCAGAGAGAGCAATTTATCAAAGAAAGAGATCGTTTCCTTACATTTGTTGACAAGCACAAGACTTGCAAGAACTGTGGAGAAATCACAAGGGAATTTGTACTAAATGACCTCCAATTACCTGAAATGGAGGTGGAGGCCTTTCCTCTTCCAAATCTGGCTGATGAGTTTCTGAACAGCCCTCAGGGCAATATGGCTGCTTCTGATGGAACAAACGTGAAGATATCTACAGGTGAAATTGATTTGGTGTCTTCAGGTTCTGATGAACTGGAACCATCCTTTGGGATTGCAAATGATTCCTTTGATATTCAACAGCTTCACTCTGATAGTGTCATGAGAGAAGTAGATGGTGGGCATGCTCAATCTGTTGATGGTGTGAGCAACATGGGCAGCAAAGAACAAGAAGGTCCAGAAGATTCCCAGCAATCAGAGCTGAAGAGTGGTCGACGGAAACCTGGGAGGAAACGGAGGACTGGAGTTCATAGAACACGATCAGTGAAGAATGAAGGTGAGCGAGAAACCAGTCATGCTGAGAAGGCTGCTAGCACCATTACAAGAAAGCGGCAGCGTGCACCATCCTCTAGAATTACAGAGAGTGAGCAGGATGCTGCTGACAGTGAAGGACGTTCTGATAGTGTCACAGCAGGTGGGCGCGGAAAGAGGCGGCAAACTGTTGCTCCAGTTGTGCAAACTCCAGGAGAAAAACGATATAATCTCAGGCGGCATAAGACTGCAGGAACAGTTGCGACAGCACAAGCCTCAGCTAACCTGCCAAAGAGAGATGAAAAAGGAGGTGATGGTGGTGACGATAATACACTGCAAACAAAGGCAAATCCTAAAGCTGCTTCTTCACCATCATTAGCAGATAGTGACAATCCCAAAACAACACCGTTAGTTCATGTTACAACATTAAAAAGTGTTGAAATTCGTGAATACTCACCAGATCGGGTTGTTAGGTTTAAAACAGTAGACATTGTTGGAGGCAACAATGATTCAGCCAGGTTGGCAGAAAATATGGAGTTGAGGCAGGAGATACCAGGTAATCCAGGTGATACTCCAGGGTATGAAGATGAAAATGGGAGCATGTCACATGAGGAGGATGACAACAGCGATGAGGATGAATCCGAGCATCCGGGTGATGCTTCAATAGGAAAGAAGCTCTGGAACTTTTTCACAACATAA 3369 44.05 MFTPQRKAWTGLSLTPRSEAQKSGGGAVSNPVNGGKGKSVAFVDGPPPPLGSLSGKAMLTGIDGGDMEDWRRLREAGLLDEAAMERKDREALVEKVSKLQNELFDYQYSMGLLLIEKKEWTSKYEELSQALAEAQEILKREKSAHFIAISEVEKREENLRKALGVERQCVAELEKALGEIHAEHSQIKLSSETKLSDANALVAKIEKRSLEVEEKLLAADAKLAEASRKSSELERKLQEVEARESVLRRERLSLNAEREAHEATFHKQKEDLREWERKLQEGEERLCEGRRIINQREEKANEIDRTLKLKERNLEEAQKKIDLDSLNVKVKEDDINNRLAELTVKEKQAESMRGILEVKEKELIVLQEKLSARERVEIQKLLDEHRAILDTKKQEFELEMEQKRNSVDEELRSKVHEVEQKEVEVLHREEKLGKREQALEKRLERVKEKEKELEAKLKTLKEKEKSLKAEEKRVEGEKKQMLADKESLHLLKDELEKIRADITEQELQIHEETERLKVTEEERSEHHRLQLELKQEIDKCRHQEEMLQKEREDLKQERIMFEKDWEALDEKRAVITKEMREIGDEKEKLEKLHLSEEERLKKEKLAMEEHIQRELEAVRIEKESFAAIMKHEQLRKRDLEIEMQNRQDEIQKRLQERERAFEEERERELNNINHLKEVARREIEEMKTERRRIEKEKQEVLLNKRQLEGHQLEMRKDIDELGILSRKLKDQREQFIKERDRFLTFVDKHKTCKNCGEITREFVLNDLQLPEMEVEAFPLPNLADEFLNSPQGNMAASDGTNVKISTGEIDLVSSGSDELEPSFGIANDSFDIQQLHSDSVMREVDGGHAQSVDGVSNMGSKEQEGPEDSQQSELKSGRRKPGRKRRTGVHRTRSVKNEGERETSHAEKAASTITRKRQRAPSSRITESEQDAADSEGRSDSVTAGGRGKRRQTVAPVVQTPGEKRYNLRRHKTAGTVATAQASANLPKRDEKGGDGGDDNTLQTKANPKAASSPSLADSDNPKTTPLVHVTTLKSVEIREYSPDRVVRFKTVDIVGGNNDSARLAENMELRQEIPGNPGDTPGYEDENGSMSHEEDDNSDEDESEHPGDASIGKKLWNFFTT* 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2495103 2505305 - Vvi1g246 Vvi1g246 769446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g246 1122 Coils Coil 293 327 - -
Vvi1g246 1122 Coils Coil 530 564 - -
Vvi1g246 1122 MobiDBLite consensus disorder prediction 1090 1104 - -
Vvi1g246 1122 PANTHER PROTEIN CROWDED NUCLEI 3 1 1122 - -
Vvi1g246 1122 Coils Coil 117 144 - -
Vvi1g246 1122 Coils Coil 195 285 - -
Vvi1g246 1122 Coils Coil 429 480 - -
Vvi1g246 1122 MobiDBLite consensus disorder prediction 1066 1122 - -
Vvi1g246 1122 MobiDBLite consensus disorder prediction 1 28 - -
Vvi1g246 1122 PANTHER PROTEIN CROWDED NUCLEI 4 1 1122 IPR040418 GO:0005634|GO:0006997
Vvi1g246 1122 MobiDBLite consensus disorder prediction 1 55 - -
Vvi1g246 1122 MobiDBLite consensus disorder prediction 892 936 - -
Vvi1g246 1122 Coils Coil 488 522 - -
Vvi1g246 1122 MobiDBLite consensus disorder prediction 1000 1029 - -
Vvi1g246 1122 Coils Coil 393 413 - -
Vvi1g246 1122 Coils Coil 629 710 - -
Vvi1g246 1122 MobiDBLite consensus disorder prediction 849 1029 - -
Vvi1g246 1122 Coils Coil 572 606 - -
Vvi1g246 1122 Coils Coil 82 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g246 - - - vvi:100242259 1808.11
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0864 Cone19ag0864 . . . Csa05g02073 . . . Blo11g00826 Bda07g01523 . Bpe11g01685 . . . . Cmo04g02051 . . . Car04g01940 . . . Bhi12g00824 . . . . . Lcy10g0868 Cla01g00563 Cam01g0586 Cec01g0578 Cco01g0602 Clacu01g0581 Cmu01g0552 Cre09g1955 Lsi09g00612 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004989 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 3 4 1 1 1 1 1 39