Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g247 ATGGCGGTGGAAGCTTCGAGATCGAGCTCGTCGGCCGATTCCTACATCGGGAGCTTGATTAGTTTGACATCCAAAAGCGAGATCAGGTACGAGGGCGTTCTCTACAACATCAACACCGAGGAGTCCAGCATCGGATTGCGAAACGTAAGGTCATTCGGTACAGAAGGACGAAAGAAGGATGGTCCCCAAGTCCCTCCAAGTGACAAAGTTTATGAATACATCCTATTTCGTGGAAGTGACATCAAGGATTTGCAGGTTAAGTCTTCACCTCCTGTTCAGGCTACACCACCTATAAACAATGACCCTGCTATTATTCAGTCTCACTATCCTCGCCCAGCTACCACATCTGCAAGCTTGCCATCTACTGTTAGTGGTCTGCCTCTATATCAACCTGGAGGGAATTTAGGATCCTGGGGCCCTGCACCGCCTCCCCCTACCGCAAATGGCAGTGGCCTTACCATGCCTATGTATTGGCAAGGATACTATGGTCCCCCAAATGGGCTTCCTCATTTACACCAACAATCTTTGCTTCGGCCCCCACCTGTTCTGTCAATGCCTCCAATGCAATATCCTGGTTTCAATGCCTCTTTACAGCCAGGAGCTCCAAATTTGCCTGGTTCGAATCTACCGGAATATTCTTCTCCTTTGCTTCCAACCAGTAGTGGTTCCCTTAATTTAACCTCTACTTCTTTATCACCATCTACTCTGCCTTCAAATCTGCCTTCAACTTCTGAAACCTTATCCAGTTTGATGCCAAATAAGGTTCCTAATCCTACTCTTCCTTCAGTAACACTAGGTATTAGCTTGCCATTAGTCACTCCTTTGAATACATCCAGTTCGGAGATAAATGCTATTGCACCACCAATTTCTAACAAGCCTAATGCAGTTTCTGGTCCAACATTGCCTTATCAAACCATATCTCAGTCCATTCCCTCTGTTGGGACATCTAGTCCAAATCATCCAGAAATAGCAGCACCTTCACTGGTAACCCCAGGTCAGTTGTTGCAGTCTGGACCAACCACAATTTCTTCATCTCCGTCTTCACAAACAGCTCACAAGGATGTGGAGGTGGTTCAGGTATCATCATCAGCCTCACAAGAATCATCAGTTCCGGTGTCAGCAGAAGCTCAACCACCGATATTACCTCTACCAGTACCTTCTCGAACTGTTCAAAAGTTGAATGGTGCTCCTTTCCAAGGTCGTCATGGTTACCGGGGACGTGGAAGAGGAACAGGGGGCTCACGTCCAGTGACAAAATTCACTGAGGATTTTGATTTCATGGCAATGAATGAGAAATTCAAGAAGGATGAAGTATGGGGTCATCTTGGTAAAGGTAATAAATCTCAGTCAAGGGACAAAGAAGTTGATGGAAAAGTCAGCGATGAAGATGATTACGAAGATGAAGATGATGCTGAATTACCAAAGTTTGAGGTCAAGCCCATCTATAATAAGGATGACTTCTTTGATTCCCTCTCTTGTAATGCCCTTGACCATGATTCACATAATGGAAGGACTAGGTTCTCCGAACAAATGAAGATTGATACTGAGACTTTCGGTGATTTTCCTAGACATCGGGGTGGTCGAGGTGGGCGTGGGCCCAATCGTGGAGGGCGTGGTCGGGGTCCTTATTATGGAAGGGGTTATGGCTATGTTGGGAGGGGCCGTGGACGGGCTATGCCCAGTCGTGGTCCCTAA 1695 46.67 MAVEASRSSSSADSYIGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDKVYEYILFRGSDIKDLQVKSSPPVQATPPINNDPAIIQSHYPRPATTSASLPSTVSGLPLYQPGGNLGSWGPAPPPPTANGSGLTMPMYWQGYYGPPNGLPHLHQQSLLRPPPVLSMPPMQYPGFNASLQPGAPNLPGSNLPEYSSPLLPTSSGSLNLTSTSLSPSTLPSNLPSTSETLSSLMPNKVPNPTLPSVTLGISLPLVTPLNTSSSEINAIAPPISNKPNAVSGPTLPYQTISQSIPSVGTSSPNHPEIAAPSLVTPGQLLQSGPTTISSSPSSQTAHKDVEVVQVSSSASQESSVPVSAEAQPPILPLPVPSRTVQKLNGAPFQGRHGYRGRGRGTGGSRPVTKFTEDFDFMAMNEKFKKDEVWGHLGKGNKSQSRDKEVDGKVSDEDDYEDEDDAELPKFEVKPIYNKDDFFDSLSCNALDHDSHNGRTRFSEQMKIDTETFGDFPRHRGGRGGRGPNRGGRGRGPYYGRGYGYVGRGRGRAMPSRGP* 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2508127 2516980 + Vvi1g247 Vvi1g247 769447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g247 564 Pfam FDF domain 419 519 IPR019050 -
Vvi1g247 564 PANTHER SCD6 PROTEIN-RELATED 1 559 - -
Vvi1g247 564 MobiDBLite consensus disorder prediction 331 417 - -
Vvi1g247 564 MobiDBLite consensus disorder prediction 512 527 - -
Vvi1g247 564 MobiDBLite consensus disorder prediction 331 373 - -
Vvi1g247 564 SMART FDF_2 418 522 IPR019050 -
Vvi1g247 564 MobiDBLite consensus disorder prediction 512 564 - -
Vvi1g247 564 CDD LSm14_N 15 86 IPR025609 -
Vvi1g247 564 MobiDBLite consensus disorder prediction 441 474 - -
Vvi1g247 564 ProSiteProfiles FFD box profile. 480 495 IPR025761 -
Vvi1g247 564 PANTHER LSM DOMAIN, FDF DOMAIN, FFD BOX, DFDF DOMAIN, TFG BOX-RELATED 1 559 - -
Vvi1g247 564 MobiDBLite consensus disorder prediction 200 246 - -
Vvi1g247 564 MobiDBLite consensus disorder prediction 194 246 - -
Vvi1g247 564 Pfam Scd6-like Sm domain 15 88 IPR025609 -
Vvi1g247 564 MobiDBLite consensus disorder prediction 106 125 - -
Vvi1g247 564 ProSiteProfiles TFG box profile. 502 522 IPR025768 -
Vvi1g247 564 Gene3D - 5 91 - -
Vvi1g247 564 ProSiteProfiles DFDF domain profile. 412 448 IPR025762 -
Vvi1g247 564 MobiDBLite consensus disorder prediction 441 458 - -
Vvi1g247 564 SUPERFAMILY Sm-like ribonucleoproteins 14 91 IPR010920 -
Vvi1g247 564 MobiDBLite consensus disorder prediction 109 125 - -
Vvi1g247 564 SMART LSM14_2 9 109 IPR025609 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g247 K18749 LSM14, RAP55, SCD6; protein LSM14 - vvi:100242198 923.694
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g247 Blo01g00476 . . . . . Bma14g01693 . Cmo04g01615 Cmo18g01071 . . Car04g01593 . Sed06g1855 Cpe09g00267 Cpe01g01755 Bhi07g01381 Tan04g0909 Cmetu10g0348 Lac13g0448 Hepe10g1862 . . Cla05g02337 Cam05g2511 Cec05g2535 Cco05g2578 Clacu05g2505 Cmu05g2367 Cre05g2484 Cone13ag0863 Cone19ag0863 . . Lsi04g00298 Csa05g02074 . Cme10g00301 . Blo11g00828 . . Bpe11g01686 . . . . . . Cma04g01995 . . Car15g01281 Cpe13g00029 . Bhi12g00822 . . . . . Lcy10g0875 Cla01g00562 Cam01g0585 Cec01g0577 Cco01g0601 Clacu01g0580 Cmu01g0551 Cre09g1956 Lsi09g00611 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001922 1 2 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 1 2 3 1 66