Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g25 ATGGATCCATCGCTCACCCCCTCTCGCCGGACCAGGCCGGCTGTGCCCAAATCCGACATATACTCCACCTTCGTCGTCCACGACGACGAAGACGACGACGAAACCGCGTTCCAGGAAAAATATTCCCGCCGGAGAACGAAATCCCAAGAGAAAGAAGATATCTATGCAACAATGGTCTACAAGGACGATCCTAACGATGACGACGACGATGATTCATCTCTTCCTCCGCTTCTCAAGCGCCTTCCCAAGGACTTCGATGCTGCACATGACTACTACGACGAGGACTCCACCGGCACCGGAGATTTCGGAACCATGATACCTCGTGGTTCGCCCTACTTGGAGCGGAGCACCGGGAAGAGGACGGACGATGAAGACAACTACTCGACTTTCGTGGTGAGATCTACGTTGGGGACTCGTGAGAGTGGGACTGTTGTTCGGAGGGGCAGCGGCGGTGCTAGTGCATCGTCGACAATGAGTAGGGCGGTGGCGAGTATGCAGGCGTCGGGAGAGTTAGGGTTCAGAAAGCATAGAAAGGGAAGCGGCTCTTCTCAAGGGGACGAAGCCCGATTTCAGGCAAGCAAGATTTCGACCAGCTCGATTCCAGAAAGCATGACAAGGGAAGATCCTTCGACTAAGTACGAATTGCTCAATGAACTAGGGAAAGGTTCATATGGGGCTGTTTACAAAGCTCGGGACATTAGAACGTCAGAGCTGGTTGCCATTAAAGTTATTTCATTATGTGAGGGGGAAGAAGGATATGAAGAAATACGTGGTGAAATTGAGATGTTGCAGCAATGTAGTCATCCAAATGTTGTCCGCTACCTTGGAAGTTACCAAGGAGAAGAGTACCTTTGGATAGTAATGGAGTACTGTGGGGGTGGAAGTGTTGCTGACTTGATGAATACCACTGAGGAGCCCTTGGATGAGTATCAAATAGCATATATTTGCAGGGAAGCATTGAAGGGTCTATCTTATTTGCACTCAATTTTCAAAGTTCATAGAGATATTAAGGGCGGTAATATCCTGCTGACTGAGCAAGGAGAGGTCAAGTTGGGTGATTTTGGGGTTGCAGCGCAGCTTACAAGGACCATGTCAAAGCGTAACACGTTCATTGGCACTCCTCATTGGATGGCTCCAGAAGTTATTCAGGAGAGTCGTTATGATGGAAAGGTGGATGTGTGGGCTCTTGGTGTGTCTGCAATTGAGATGGCAGAGGGGCTTCCTCCAAGATCAGCCGTGCATCCAATGAGGGTCTTGTTCATGATATCTATTGAGCCAGCTCCAATGCTTGAGGATAAAGAGAAATGGTCTCTTGTGTTCCATGATTTTGTTGCAAAGTGCCTTACAAAAGAACCCCGTCTTCGGCCTACTGCATCTGAGATGCTAAAGCACAAATTCATAGAGAAATGCAAATGTGGAGCTTCTGCAATGTTACCAAAGATTGAAAAGGCGAGGCAAATTCGGGCCTCGATGGCGCTGCAAGCACAAAGTCTGGCTCGAATCACCTCTATATCAGGAGATGCTCCTCCGGAAGGTCCAAAATTGAATGAGGATTATGGAGATACAGTTCCATCAAGGCCTTTCAACAATGGACTTCAAGTTACAAATGAGGTACCCACAGCTAGTACTTTGGTGAAGCAGAAGATATCTGATGGTGTGGAACTAGAAGGAGAAGGTGAGTTTGGGACTGTAATAGTTCATGGTGGGTTTGAGATGGATAAAACCGCCAATCAAACACCTGTTTCCAGTACAAAAGAACCCTCAGCTGCTCATGAAAATGTTGAGAGCCATCCTGTTGGTGGCCCTGGAATCAAATCAACTAACAACTGGGTGGAGGATACAGTTGATGTTGCTGCAAACAATGACCAGGTTGGAGAATCACATCCAGGGGAACAAACAACATCCAAATCAGTATTTGGCTCTCCTGAGCAGAATCTCAGGACAAGTAGCATTTCTCAGGTGCAAGCTGGAGGTGGTGGTGTGAGCAGTAGCCAATTAAAGAATGAAACAGTCAGTAGGACAGCCTTTGCATCACAAGATAAGCTTTGGTCCATATATGCAGCTGGTAACACAGTACCCATTCCATTCTTGAGGGCAACTGATATATCTCCAATTGCTCTTTTGTCTGGCAATGTTCTTGGAGGAAGGCAACGAGAAAGTAGTGGAGCTGTTGCCGTGGAAGCGGTGCAGGAGCTTTTTACTGGTGATAGTCAGCTCAAGAAGGGTAGAAGGGGACAAAATGAGATTCCCCTTCCTCCAAGCATGTACCAGAGGCTCACTTCAAGCTCTACGCTATTGAATCTGGCACAAGCTTTGGCTTACCACAAAACGAGTTATGAAGAGATGCCACTCCAGGATCTGCAAGCAGTACAAGAGCAACAGACTATTCAAAACCTTTGTGATACACTTCGAACTATTCTGCGGCTGTAG 2430 47.53 MDPSLTPSRRTRPAVPKSDIYSTFVVHDDEDDDETAFQEKYSRRRTKSQEKEDIYATMVYKDDPNDDDDDDSSLPPLLKRLPKDFDAAHDYYDEDSTGTGDFGTMIPRGSPYLERSTGKRTDDEDNYSTFVVRSTLGTRESGTVVRRGSGGASASSTMSRAVASMQASGELGFRKHRKGSGSSQGDEARFQASKISTSSIPESMTREDPSTKYELLNELGKGSYGAVYKARDIRTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNTTEEPLDEYQIAYICREALKGLSYLHSIFKVHRDIKGGNILLTEQGEVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLVFHDFVAKCLTKEPRLRPTASEMLKHKFIEKCKCGASAMLPKIEKARQIRASMALQAQSLARITSISGDAPPEGPKLNEDYGDTVPSRPFNNGLQVTNEVPTASTLVKQKISDGVELEGEGEFGTVIVHGGFEMDKTANQTPVSSTKEPSAAHENVESHPVGGPGIKSTNNWVEDTVDVAANNDQVGESHPGEQTTSKSVFGSPEQNLRTSSISQVQAGGGGVSSSQLKNETVSRTAFASQDKLWSIYAAGNTVPIPFLRATDISPIALLSGNVLGGRQRESSGAVAVEAVQELFTGDSQLKKGRRGQNEIPLPPSMYQRLTSSSTLLNLAQALAYHKTSYEEMPLQDLQAVQEQQTIQNLCDTLRTILRL* 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 342582 373752 - Vvi1g25 Vvi1g25 769225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g25 809 MobiDBLite consensus disorder prediction 36 62 - -
Vvi1g25 809 MobiDBLite consensus disorder prediction 625 669 - -
Vvi1g25 809 SMART serkin_6 213 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g25 809 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 156 799 - -
Vvi1g25 809 CDD STKc_MAP4K3_like 212 467 - -
Vvi1g25 809 ProSitePatterns Protein kinases ATP-binding region signature. 219 242 IPR017441 GO:0005524
Vvi1g25 809 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 156 799 - -
Vvi1g25 809 MobiDBLite consensus disorder prediction 72 96 - -
Vvi1g25 809 MobiDBLite consensus disorder prediction 184 206 - -
Vvi1g25 809 ProSiteProfiles Protein kinase domain profile. 213 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g25 809 Gene3D Transferase(Phosphotransferase) domain 1 209 500 - -
Vvi1g25 809 MobiDBLite consensus disorder prediction 173 209 - -
Vvi1g25 809 Pfam Protein kinase domain 213 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g25 809 MobiDBLite consensus disorder prediction 22 126 - -
Vvi1g25 809 MobiDBLite consensus disorder prediction 621 669 - -
Vvi1g25 809 SUPERFAMILY Protein kinase-like (PK-like) 212 468 IPR011009 -
Vvi1g25 809 MobiDBLite consensus disorder prediction 575 604 - -
Vvi1g25 809 MobiDBLite consensus disorder prediction 575 589 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g25 - - - vvi:100267868 1528.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g25 Blo01g00457 . . . . . . . . Cmo18g01122 . Cma18g01102 . Car18g01016 . Cpe09g00224 . . . . . . . . . . . . . . . Cone13ag0901 Cone19ag0899 . . . . . . . . . . . . Bma01g00127 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi19g189 . 1 707 MAP Kinase Kinase Kinase Kinase AT1G53165 65.0 1.5e-235 812.8
Vvi1g25 . 206 471 MAP Kinase Kinase Kinase Kinase AT1G53165 51.7 1.8e-68 257.7
Vvi19g189 . 1 703 MAP Kinase Kinase Kinase Kinase AT3G15220 67.2 2.7e-245 845.1
Vvi1g25 . 206 471 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 5.4e-68 256.1
Vvi1g25 . 1 810 MAP Kinase Kinase Kinase Kinase AT1G69220 59.5 8.1e-241 830.5
Vvi19g189 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.8 9.8e-69 258.8
Vvi14g1350 ECH 4 588 MAP Kinase Kinase Kinase Kinase AT5G14720 69.3 7.0e-238 820.5
Vvi1g702 ECH 1 338 MAP Kinase Kinase Kinase Kinase AT5G14720 76.2 4.8e-154 542.0
Vvi9g927 . 3 560 MAP Kinase Kinase Kinase Kinase AT5G14720 51.7 5.3e-153 538.5
Vvi5g641 . 7 295 MAP Kinase Kinase Kinase Kinase AT5G14720 54.4 4.4e-91 332.8
Vvi2g230 . 11 719 MAP Kinase Kinase Kinase Kinase AT4G24100 66.3 4.0e-255 877.9
Vvi14g1350 ECH 2 353 MAP Kinase Kinase Kinase Kinase AT4G24100 65.6 3.0e-138 489.6
Vvi9g927 . 2 360 MAP Kinase Kinase Kinase Kinase AT4G24100 61.8 1.4e-130 464.2
Vvi1g702 ECH 9 347 MAP Kinase Kinase Kinase Kinase AT4G24100 64.0 1.3e-125 447.6
Vvi5g641 . 14 288 MAP Kinase Kinase Kinase Kinase AT4G24100 53.5 4.0e-82 303.1
Vvi2g230 . 9 720 MAP Kinase Kinase Kinase Kinase AT4G10730 66.8 6.5e-255 877.1
Vvi1g702 ECH 7 347 MAP Kinase Kinase Kinase Kinase AT4G10730 63.4 1.3e-125 447.6
Vvi5g641 . 14 294 MAP Kinase Kinase Kinase Kinase AT4G10730 53.5 2.6e-86 317.0
Vvi14g1350 ECH 5 349 MAP Kinase Kinase Kinase Kinase AT1G70430 73.9 3.7e-150 528.9
Vvi1g702 ECH 5 347 MAP Kinase Kinase Kinase Kinase AT1G70430 67.3 1.7e-134 476.9
Vvi9g927 . 4 398 MAP Kinase Kinase Kinase Kinase AT1G70430 58.5 3.5e-132 469.2
Vvi2g230 . 5 370 MAP Kinase Kinase Kinase Kinase AT1G70430 58.6 6.2e-121 431.8
Vvi9g927 . 1 565 MAP Kinase Kinase Kinase Kinase AT1G79640 67.5 2.8e-207 718.8
Vvi14g1350 ECH 4 583 MAP Kinase Kinase Kinase Kinase AT1G79640 50.1 2.9e-159 559.3
Vvi1g702 ECH 4 347 MAP Kinase Kinase Kinase Kinase AT1G79640 64.0 1.2e-133 474.2
Vvi5g641 . 13 295 MAP Kinase Kinase Kinase Kinase AT1G79640 51.7 3.9e-84 309.7
Vvi14g1350 ECH 4 326 MAP Kinase Kinase Kinase Kinase AT1G23700 60.1 1.2e-103 374.0
Vvi1g702 ECH 8 333 MAP Kinase Kinase Kinase Kinase AT1G23700 56.8 2.2e-100 363.2
Vvi9g927 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 53.3 4.1e-91 332.4
Vvi2g230 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.5 4.5e-77 285.8
Vvi5g641 . 8 416 MAP Kinase Kinase Kinase Kinase AT4G14480 54.9 2.7e-130 462.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76497 PF00069 Pkinase 1.50E-67 CL0016 Vvi PK