Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g25 ATGGATCCATCGCTCACCCCCTCTCGCCGGACCAGGCCGGCTGTGCCCAAATCCGACATATACTCCACCTTCGTCGTCCACGACGACGAAGACGACGACGAAACCGCGTTCCAGGAAAAATATTCCCGCCGGAGAACGAAATCCCAAGAGAAAGAAGATATCTATGCAACAATGGTCTACAAGGACGATCCTAACGATGACGACGACGATGATTCATCTCTTCCTCCGCTTCTCAAGCGCCTTCCCAAGGACTTCGATGCTGCACATGACTACTACGACGAGGACTCCACCGGCACCGGAGATTTCGGAACCATGATACCTCGTGGTTCGCCCTACTTGGAGCGGAGCACCGGGAAGAGGACGGACGATGAAGACAACTACTCGACTTTCGTGGTGAGATCTACGTTGGGGACTCGTGAGAGTGGGACTGTTGTTCGGAGGGGCAGCGGCGGTGCTAGTGCATCGTCGACAATGAGTAGGGCGGTGGCGAGTATGCAGGCGTCGGGAGAGTTAGGGTTCAGAAAGCATAGAAAGGGAAGCGGCTCTTCTCAAGGGGACGAAGCCCGATTTCAGGCAAGCAAGATTTCGACCAGCTCGATTCCAGAAAGCATGACAAGGGAAGATCCTTCGACTAAGTACGAATTGCTCAATGAACTAGGGAAAGGTTCATATGGGGCTGTTTACAAAGCTCGGGACATTAGAACGTCAGAGCTGGTTGCCATTAAAGTTATTTCATTATGTGAGGGGGAAGAAGGATATGAAGAAATACGTGGTGAAATTGAGATGTTGCAGCAATGTAGTCATCCAAATGTTGTCCGCTACCTTGGAAGTTACCAAGGAGAAGAGTACCTTTGGATAGTAATGGAGTACTGTGGGGGTGGAAGTGTTGCTGACTTGATGAATACCACTGAGGAGCCCTTGGATGAGTATCAAATAGCATATATTTGCAGGGAAGCATTGAAGGGTCTATCTTATTTGCACTCAATTTTCAAAGTTCATAGAGATATTAAGGGCGGTAATATCCTGCTGACTGAGCAAGGAGAGGTCAAGTTGGGTGATTTTGGGGTTGCAGCGCAGCTTACAAGGACCATGTCAAAGCGTAACACGTTCATTGGCACTCCTCATTGGATGGCTCCAGAAGTTATTCAGGAGAGTCGTTATGATGGAAAGGTGGATGTGTGGGCTCTTGGTGTGTCTGCAATTGAGATGGCAGAGGGGCTTCCTCCAAGATCAGCCGTGCATCCAATGAGGGTCTTGTTCATGATATCTATTGAGCCAGCTCCAATGCTTGAGGATAAAGAGAAATGGTCTCTTGTGTTCCATGATTTTGTTGCAAAGTGCCTTACAAAAGAACCCCGTCTTCGGCCTACTGCATCTGAGATGCTAAAGCACAAATTCATAGAGAAATGCAAATGTGGAGCTTCTGCAATGTTACCAAAGATTGAAAAGGCGAGGCAAATTCGGGCCTCGATGGCGCTGCAAGCACAAAGTCTGGCTCGAATCACCTCTATATCAGGAGATGCTCCTCCGGAAGGTCCAAAATTGAATGAGGATTATGGAGATACAGTTCCATCAAGGCCTTTCAACAATGGACTTCAAGTTACAAATGAGGTACCCACAGCTAGTACTTTGGTGAAGCAGAAGATATCTGATGGTGTGGAACTAGAAGGAGAAGGTGAGTTTGGGACTGTAATAGTTCATGGTGGGTTTGAGATGGATAAAACCGCCAATCAAACACCTGTTTCCAGTACAAAAGAACCCTCAGCTGCTCATGAAAATGTTGAGAGCCATCCTGTTGGTGGCCCTGGAATCAAATCAACTAACAACTGGGTGGAGGATACAGTTGATGTTGCTGCAAACAATGACCAGGTTGGAGAATCACATCCAGGGGAACAAACAACATCCAAATCAGTATTTGGCTCTCCTGAGCAGAATCTCAGGACAAGTAGCATTTCTCAGGTGCAAGCTGGAGGTGGTGGTGTGAGCAGTAGCCAATTAAAGAATGAAACAGTCAGTAGGACAGCCTTTGCATCACAAGATAAGCTTTGGTCCATATATGCAGCTGGTAACACAGTACCCATTCCATTCTTGAGGGCAACTGATATATCTCCAATTGCTCTTTTGTCTGGCAATGTTCTTGGAGGAAGGCAACGAGAAAGTAGTGGAGCTGTTGCCGTGGAAGCGGTGCAGGAGCTTTTTACTGGTGATAGTCAGCTCAAGAAGGGTAGAAGGGGACAAAATGAGATTCCCCTTCCTCCAAGCATGTACCAGAGGCTCACTTCAAGCTCTACGCTATTGAATCTGGCACAAGCTTTGGCTTACCACAAAACGAGTTATGAAGAGATGCCACTCCAGGATCTGCAAGCAGTACAAGAGCAACAGACTATTCAAAACCTTTGTGATACACTTCGAACTATTCTGCGGCTGTAG 2430 47.53 MDPSLTPSRRTRPAVPKSDIYSTFVVHDDEDDDETAFQEKYSRRRTKSQEKEDIYATMVYKDDPNDDDDDDSSLPPLLKRLPKDFDAAHDYYDEDSTGTGDFGTMIPRGSPYLERSTGKRTDDEDNYSTFVVRSTLGTRESGTVVRRGSGGASASSTMSRAVASMQASGELGFRKHRKGSGSSQGDEARFQASKISTSSIPESMTREDPSTKYELLNELGKGSYGAVYKARDIRTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNTTEEPLDEYQIAYICREALKGLSYLHSIFKVHRDIKGGNILLTEQGEVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLVFHDFVAKCLTKEPRLRPTASEMLKHKFIEKCKCGASAMLPKIEKARQIRASMALQAQSLARITSISGDAPPEGPKLNEDYGDTVPSRPFNNGLQVTNEVPTASTLVKQKISDGVELEGEGEFGTVIVHGGFEMDKTANQTPVSSTKEPSAAHENVESHPVGGPGIKSTNNWVEDTVDVAANNDQVGESHPGEQTTSKSVFGSPEQNLRTSSISQVQAGGGGVSSSQLKNETVSRTAFASQDKLWSIYAAGNTVPIPFLRATDISPIALLSGNVLGGRQRESSGAVAVEAVQELFTGDSQLKKGRRGQNEIPLPPSMYQRLTSSSTLLNLAQALAYHKTSYEEMPLQDLQAVQEQQTIQNLCDTLRTILRL* 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 342582 373752 - Vvi1g25 Vvi1g25 769225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g25 809 MobiDBLite consensus disorder prediction 36 62 - -
Vvi1g25 809 MobiDBLite consensus disorder prediction 625 669 - -
Vvi1g25 809 SMART serkin_6 213 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g25 809 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 156 799 - -
Vvi1g25 809 CDD STKc_MAP4K3_like 212 467 - -
Vvi1g25 809 ProSitePatterns Protein kinases ATP-binding region signature. 219 242 IPR017441 GO:0005524
Vvi1g25 809 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 156 799 - -
Vvi1g25 809 MobiDBLite consensus disorder prediction 72 96 - -
Vvi1g25 809 MobiDBLite consensus disorder prediction 184 206 - -
Vvi1g25 809 ProSiteProfiles Protein kinase domain profile. 213 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g25 809 Gene3D Transferase(Phosphotransferase) domain 1 209 500 - -
Vvi1g25 809 MobiDBLite consensus disorder prediction 173 209 - -
Vvi1g25 809 Pfam Protein kinase domain 213 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g25 809 MobiDBLite consensus disorder prediction 22 126 - -
Vvi1g25 809 MobiDBLite consensus disorder prediction 621 669 - -
Vvi1g25 809 SUPERFAMILY Protein kinase-like (PK-like) 212 468 IPR011009 -
Vvi1g25 809 MobiDBLite consensus disorder prediction 575 604 - -
Vvi1g25 809 MobiDBLite consensus disorder prediction 575 589 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76497 PF00069 Pkinase 1.50E-67 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g25 - - vvi:100267868 1528.07