Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g250 ATGTGTTCTTCCTCTGCATCTCCCTCGTCTCTTTTCCTCTCCACCGGCACTCCTATTCTACGAAGTCGTATCGTTCCAATCTTCAGTTCTTCTAGCCCATTTATCAATTCTCACAGATTCAGAAACCCTAGGTTATGTATCTCCTCATCAGTCTCCGAGACAAGCTTCGAGGTCACGTGGGTGTCTCCTGAACGCAATGCAAGCGACGACTATGGTGGCTGGGCGGTTGTCGAGTCTCCATGTCGTAAGAAGAAGAAAGGGTCAAGTGCACTTTTTTGTGTGGTTACTGGGACTTCGATTGCCATTCTACTCTCCGCCATTGCTTACTTCTCATTATCAAGAAAAGGTTTTAGGCTTCAGTTTAATAAACCGATGCATTCTATCCATGAAATCTTTGTGCGAACTAAAACTGAAGCTGGTCAAAGCAACACTGTGTACTCCAATGCATCTGATGTGGACACCAACATTGTTGAGGCCGGCACAGAGAGTGCATCTAATGAAATTGATGAAGATGTGGCATCAGCATCCAAAAAGGTTAAGCATGTTCTGATCCCAGTTGCTGCAGATTCCACTCAACAAGAAGCTCTATTGGTTCTGAAGAAACTGAAGATAATTGAGGATGATGTCAGTGCAGATGAATTATGCACTAAGAGGGAGTATGCAAGATGGTTGGTCCGAGCAAATTTGTTACTAGAAAGGGACCCAAGACACAGGATATTTTCCTCCAGTTTACCTTCTGGGTCCATAATTTCTGCATTTGATGATGTGAATGCTGAAGACAGAGATTATGGGTCTATTCAAGCCCTAGCAGAGGCTGGCATTATACCTAGCAAGCTATCAGGGAACTCCAACTCTGCTCTTGACAGTTCGAAAGTCCAGGGAGAGGTCTATTTTTCCCCTGATAGATTTATATCCAGACAAGATCTGATAAACTGGAAGGCTCAATTAGAATATAAATTCATGCCAGGAATTAAAGAGAAGATATCCAGAACAAAAGTGGATTTTATGGACATGAAGGAGATCAGTTCAGATGCATCACCAGAGTTTTTTATAGACATGCTGGCTGGTGACAGGAGTATAGTCAGAAAAGTTTTTGGACAGAGCAAGCGGTTTCAACCAAATAAACCTTCAACAAAAGCACAATCAGCAGTTGCACTGACAAGTGGTAGGATGACAGAAGTAATTCATACAGAATTGTTGAGACTAGAGGCTGAGAAACTCTCAAGGGAAGCTGAAGCTGAAGAAATTAGGTCTCAGTTGCTCAACCGAGGAGACATACAAAGCTTTTGGAGTGAGAAGATTAAAGATGAGAAAATCCGTGGTTTTGAGGTGGAGAAGGACTATCTTGCTGCAGTTAGTGATTTGGAAGAGGAGAGGATTGTTCATGTGAATTGTCTCACTGAGAATTTGAAGGAGAAGGCAGCTATGGAATGCCAGAGTCAGCTTCTTTTCAGGCTCAAAGATGAAGTCGATGAGATGTCAGAGCGGCTTGCATGTGAGAGGACGGGTTATATGGCTGAGCAGCGCAATTTGCAGGACATGCTCAATGAATTACAGAACAAACAGGAAGGAGTGCTTGATGTGAAATCTATACTGGAAGCTGAGAAAGAAGCTCTTCGAATTCTCAGATCTTGGGTTGAGGATGAAGCACGAAAAAACCAAGCTCGTGCCAAGGTTCTTGAGGAGGTAGGACGGCGGTGGAAATGGGACAGTGATGCCCAAATGTCATAA 1731 43.44 MCSSSASPSSLFLSTGTPILRSRIVPIFSSSSPFINSHRFRNPRLCISSSVSETSFEVTWVSPERNASDDYGGWAVVESPCRKKKKGSSALFCVVTGTSIAILLSAIAYFSLSRKGFRLQFNKPMHSIHEIFVRTKTEAGQSNTVYSNASDVDTNIVEAGTESASNEIDEDVASASKKVKHVLIPVAADSTQQEALLVLKKLKIIEDDVSADELCTKREYARWLVRANLLLERDPRHRIFSSSLPSGSIISAFDDVNAEDRDYGSIQALAEAGIIPSKLSGNSNSALDSSKVQGEVYFSPDRFISRQDLINWKAQLEYKFMPGIKEKISRTKVDFMDMKEISSDASPEFFIDMLAGDRSIVRKVFGQSKRFQPNKPSTKAQSAVALTSGRMTEVIHTELLRLEAEKLSREAEAEEIRSQLLNRGDIQSFWSEKIKDEKIRGFEVEKDYLAAVSDLEEERIVHVNCLTENLKEKAAMECQSQLLFRLKDEVDEMSERLACERTGYMAEQRNLQDMLNELQNKQEGVLDVKSILEAEKEALRILRSWVEDEARKNQARAKVLEEVGRRWKWDSDAQMS* 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2528439 2534313 + Vvi1g250 Vvi1g250 769450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g250 576 Coils Coil 397 419 - -
Vvi1g250 576 Pfam S-layer homology domain 253 309 IPR001119 -
Vvi1g250 576 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 1 572 - -
Vvi1g250 576 ProSiteProfiles S-layer homology (SLH) domain profile. 249 327 IPR001119 -
Vvi1g250 576 PANTHER SLH DOMAIN PROTEIN 1 572 - -
Vvi1g250 576 Coils Coil 501 524 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g250 - - - vvi:100259365 1087.02
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g250 . . . . . . . . Cmo04g01614 . . . Car04g01591 . . . Cpe01g01370 Bhi07g01379 . . Lac13g0450 . . . Cla05g02336 Cam05g2510 Cec05g2534 Cco05g2577 Clacu05g2504 Cmu05g2366 Cre05g2483 Cone13ag0862 Cone19ag0862 . . Lsi04g00297 Csa05g02571 . Cme10g00299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014585 0 1 1 0 1 0 2 1 1 0 0 0 1 1 1 1 0 2 1 1 1 1 0 1 0 0 1 0 0 1 20