Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g252 ATGGCTTCTTCACCTTTGTTGCTATCGTCAGCATTGTCACGAAACCCTAATTCCGGATTATCTATCCGAAGAAGACGGCATGGAGCTCTGGCCACGACAGCATCGTCGGAGGAAGATCATTCCACCAAATTGGTCACTTTTTTGGGCAAAGGTGGTTCCGGCAAGACCACTTCCGCCATCTTCGCGGCTCAGCATTATGCCATGACAGGGTTTAATACATGCTTGGTGATACATTCCCAAGACCCAACTGCGGAATATCTTCTGAACTGTAAGATTGGAACTTCTCCCATAATCTGCAACAATAACCTTTCGGCTGTTAGGTTGGAAACCACTAAAATGCTTCTTGAACCACTACATCTGCTGAAGAAAGCAGATGCAGAACTTAATATCACCCAAGGGGTTCTCGAAGGGGTGGTGGGAGAAGAGCTTGGAGTGCTTCCTGGGATGGATTCTGTGTTTACATTGCTCGCACTTGAGAGGCTGGTGGGATTCTTAGGGAATTTGGGTCGAAGAAATCTCCGAAAAGATAAATATGACATAATCATATATGATGGTATTAACACTGAGGAAACCCTACGCATGATAGGTGTAACCAGTAGAGCAAGATTGTACTTGAAATATCTGCGCAACATGGCTGAGAGAACTGATATTGGAAGGTTGGCTGGTCCTTCACTCTTGAGGCTTGTTGATGAAGCCATGAGTTTAAGCACCAGGGGATCCAATCTCAATGGGAAAATGAGTTCCGAAATATGGGACATACTGGAGCGTGCTCTTGAGAGAGGATCTTCTGCTTTTGGAGAACCACGTGAGTTTGGCTGCTACCTTGTGGTGGACCCAAACAATCCAGCATCAGTGAGCTCTGCATTACGATACTGGGGTTGTGCAATTCAAGCTGGTGCACAGGTTTCTGGTGCATTTGGCACGGCTTCTCCACATTCTGATGTTGAATCAGAGGAAATAGTCAAGAACTTTTCACCCTTGCCTTTTGCTTTGTGCCCACATGTCCCAATGGGTTCCCTGCCTGATTGGAATGCAATCATATCAAGCAATCCCAGTGAAGACGCACGAAATCTTCTTTCTGCACCAGCAAGCAGCAGCAGCAATGTTATGGAGCCAGTTAAGTTTGATCCATCCAAGAAATCAGTCAGCCTTCTCATGCCAGGTTTTGACAAGTCAGAGATCAAGCTATACCAATATAGGGGAGGATCTGAATTGCTGGTGGAAGCAGGGGACCAGAGACGTGTCATTCGTCTGCCACCAGAAATTCAAGGAAAGGTTGGAGGTGCCAAATTTGCAGACAGAAAACTTGTCATCACAATGCGATAG 1326 46.15 MASSPLLLSSALSRNPNSGLSIRRRRHGALATTASSEEDHSTKLVTFLGKGGSGKTTSAIFAAQHYAMTGFNTCLVIHSQDPTAEYLLNCKIGTSPIICNNNLSAVRLETTKMLLEPLHLLKKADAELNITQGVLEGVVGEELGVLPGMDSVFTLLALERLVGFLGNLGRRNLRKDKYDIIIYDGINTEETLRMIGVTSRARLYLKYLRNMAERTDIGRLAGPSLLRLVDEAMSLSTRGSNLNGKMSSEIWDILERALERGSSAFGEPREFGCYLVVDPNNPASVSSALRYWGCAIQAGAQVSGAFGTASPHSDVESEEIVKNFSPLPFALCPHVPMGSLPDWNAIISSNPSEDARNLLSAPASSSSNVMEPVKFDPSKKSVSLLMPGFDKSEIKLYQYRGGSELLVEAGDQRRVIRLPPEIQGKVGGAKFADRKLVITMR* 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2542527 2544985 - Vvi1g252 Vvi1g252 769452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g252 441 Gene3D - 41 358 IPR027417 -
Vvi1g252 441 PANTHER OS02G0711200 PROTEIN 21 441 - -
Vvi1g252 441 CDD ArsA 43 235 - -
Vvi1g252 441 Pfam HSP20-like domain found in ArsA 380 440 IPR040612 -
Vvi1g252 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 312 IPR027417 -
Vvi1g252 441 Pfam Anion-transporting ATPase 42 220 IPR025723 -
Vvi1g252 441 Gene3D - 370 441 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g252 - - - vvi:100254250 829.706
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g252 . . . . . . . . Cmo04g01611 . . . Car04g01589 . Sed07g2052 . Cpe01g01368 Bhi07g01377 Tan04g0904 Cmetu10g1528 Lac13g0452 Hepe10g1865 . . Cla05g02335 Cam05g2509 Cec05g2532 Cco05g2575 Clacu05g2503 Cmu05g2365 Cre05g2481 . . . . Lsi04g00296 Csa05g02573 Chy10g01110 Cme10g00297 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007692 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 3 34