Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g255 ATGCAACAACAAAACAATGATGCATATGGAGGTGGAGGAGGAAGGTCTGGATTGATATTTCCTGAAGTCTCACCAATCCTGCAGCCATGGTCTTTCCCTCCGGTCCACGCCTTCAACCCGGCTCACTTCGCTGCAAACCCGGTTCGAGACCACGACCCATTTCTTGTTCCTCCTCCCCCATCTGCATACGGGAGTGTATTCAACAGAAGAGCTCCAGCCCTACAGTTTGCATATGAGGGTCCATCATCAGAGCACCTCAGAATCATTTCAGACACCCTTGGACCGGTGGTTCAACCCGGTTCCTCCCCTTTTGGGCTTCAAGCTGAGTTGGGTAAGATGACTGCTCAGGAGATTATGGATGCAAAGGCCCTTGCAGCTTCTAAGAGCCACAGTGAGGCTGAGAGGAGAAGAAGAGAGAGAATCAACAACCATCTAGCTAAACTGCGCAGCTTACTGCCCAGCACCACCAAAACGGACAAAGCTTCACTGCTAGCAGAAGTGATACAGCATGTTAAAGAACTTAAACGACAGACATCTCTGATTGCAGAGTCTAGTCCGGTACCAACTGAAATGGATGAGCTAACGGTGGATACATCTGACGAGGATGGTAAGTTTGTGATCAAGGCTTCACTGTGCTGTGAAGACAGAACGGATCTCTTGCCCGACCTTATCAAGACCTTGAAAGCTCTAAGGTTAAGAACACTGAAAGCTGAGATCACAACGCTGGGGGGACGTGTGAAGAACGTCTTGTTCATCACCGGAGAGGAAGATTCTAGTAGTAGTGGTGAAAACCAGCAGCAGCAGCAACAGCAACAGCAACAGTACTCTATAAGTTCAATTCAGGAAGCACTTAAGGCAGTGATGGAGAAGACAGGTGGTGATGAGTCTTCATCAGGTAGTGTTAAGAGACAAAGAACCAATATCAATATCATTGAACACAGATCTCTTTAA 951 47.74 MQQQNNDAYGGGGGRSGLIFPEVSPILQPWSFPPVHAFNPAHFAANPVRDHDPFLVPPPPSAYGSVFNRRAPALQFAYEGPSSEHLRIISDTLGPVVQPGSSPFGLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAESSPVPTEMDELTVDTSDEDGKFVIKASLCCEDRTDLLPDLIKTLKALRLRTLKAEITTLGGRVKNVLFITGEEDSSSSGENQQQQQQQQQQYSISSIQEALKAVMEKTGGDESSSGSVKRQRTNINIIEHRSL* 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2606151 2608392 + Vvi1g255 Vvi1g255 769455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g255 316 MobiDBLite consensus disorder prediction 255 308 - -
Vvi1g255 316 PANTHER TRANSCRIPTION FACTOR BHLH30 43 312 IPR045847 GO:0003700|GO:0006355
Vvi1g255 316 PANTHER TRANSCRIPTION FACTOR BHLH30 43 312 - -
Vvi1g255 316 MobiDBLite consensus disorder prediction 255 281 - -
Vvi1g255 316 SMART finulus 131 180 IPR011598 GO:0046983
Vvi1g255 316 CDD bHLH_AtAIG1_like 120 197 - -
Vvi1g255 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 181 IPR036638 GO:0046983
Vvi1g255 316 Gene3D - 120 181 IPR036638 GO:0046983
Vvi1g255 316 Pfam Helix-loop-helix DNA-binding domain 128 174 IPR011598 GO:0046983
Vvi1g255 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14491 PF00010 HLH 1.50E-12 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g255 - - vvi:100250878 573.933