Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g256 ATGAGCTGGAGGAGGGTGGCGACGTCCCTTCAGGCTCCGGCGGCTCATGGTTTGCTTTTGACCTTTACGCTCTTGCTCGTTCTCAAGCTAGATCACGCCGTGTCCTATTCATGGTGGATCATTTTTGCTCCTCTCTGGCTGTTTCATGCAGTTGTGGCAAGAGGCAGATTCTCCTTACCTGCCCCATCAATGCCTCATGATCGACATTGGGCACCATTTCATGCCGTCACAGCGACGCCGTTGCTTGTTGCTTTTGAACTACTCCTTTGTATATATCTCCAGCACAGTTATGTGATTAAATGCATTGCAGCTGTAAATCTGAAGATCGTTTTTCTGCCCTTGCTGGCATTAGAAGCAGCTATTTTAATTGACAACATCAGGATGTGTAAGGCTTTAATGCCTGGAGATGATGAAAGCATTAGTGATGAAGCAATATGGGAGACCCTTCCTCACTTTTGGGTTGCTATCTCTATGGTCTTCTTCATCGCTGCAACTACATTCACTCTTCTGAAGCTATGTGGTGATGTAGCAGCTCTAGGCTGGTGGGATTTATTTATAAATTTTGGGATTGCAGAGTGTTTTGCTTCTATTGTTTGCACAAGGTGGTACAATCCAGCAATTCATAGGAACTCTCATATCAGACAAACTGGTTCATCTTCAATGATTATTAGATATCTTGACTGGAATAGTGGCTTAGTAGTTTCTTCAGATGAAGATCAGCACCAAAGTCGACTATGTGACCTGCAGGACATTGGTGGACATATTATGAAAATTCCTCTTGTTGGCTTCCAGATCCTGCTTTTTATGCGCTTGGAGGGAACCCCATCTAGTGCTAGGCATATTCCAATTCCACTTCTCTTTGCTCCTCTATTTTTGCTGCAAGGAATTGGGGTCTTGTTTGCATTATATAGATTGGTGGAGAAAATTGTTCTTTTACTACATAGTGCAGCTGGTACAGAAAGATACTTTGCAATATCTTCCAAAGTTCGCAGTTATTTTGGTTTCTTGCACCATGGGTCAAGGTTGCTTGGTTGGTGGTCAATTGATGAAGGAAGTCGAGAAGAACAGGCTCGACTTTATTACGCTGGGGCATCTGGGTACAACACTTTCTCACCTGATACTGTGAAGAAATTGCCTAAATCAGACCTTGCTGAGGAGATTTGGAGATTACAAGCAGCACTAGGTGAGCAAACAGAAATCACAAAATTTAGCCAGCAGGAGTTTGAAAGGCTTCAAAATGAAAAGATCCTTTGTAGGGTTTGCTTTGATGAACAGATAAATATGGTCTTGCTTCCATGTAGGCATCATGTCCTTTGCAGCACTTGTTGTGAGAAGTGCAAGAGGTGCCCCATTTGCCGTGTTTTTATCGAAGAGAGATTGCCTGTATACGATGTGTAG 1398 43.2 MSWRRVATSLQAPAAHGLLLTFTLLLVLKLDHAVSYSWWIIFAPLWLFHAVVARGRFSLPAPSMPHDRHWAPFHAVTATPLLVAFELLLCIYLQHSYVIKCIAAVNLKIVFLPLLALEAAILIDNIRMCKALMPGDDESISDEAIWETLPHFWVAISMVFFIAATTFTLLKLCGDVAALGWWDLFINFGIAECFASIVCTRWYNPAIHRNSHIRQTGSSSMIIRYLDWNSGLVVSSDEDQHQSRLCDLQDIGGHIMKIPLVGFQILLFMRLEGTPSSARHIPIPLLFAPLFLLQGIGVLFALYRLVEKIVLLLHSAAGTERYFAISSKVRSYFGFLHHGSRLLGWWSIDEGSREEQARLYYAGASGYNTFSPDTVKKLPKSDLAEEIWRLQAALGEQTEITKFSQQEFERLQNEKILCRVCFDEQINMVLLPCRHHVLCSTCCEKCKRCPICRVFIEERLPVYDV* 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2618633 2632747 + Vvi1g256 Vvi1g256 769456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g256 465 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 465 - -
Vvi1g256 465 SUPERFAMILY RING/U-box 409 460 - -
Vvi1g256 465 Pfam Transmembrane Fragile-X-F protein 28 293 IPR019396 -
Vvi1g256 465 ProSiteProfiles Zinc finger RING-type profile. 418 453 IPR001841 -
Vvi1g256 465 Pfam Zinc finger, C3HC4 type (RING finger) 416 458 - -
Vvi1g256 465 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 465 - -
Vvi1g256 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 463 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g256 Vvi17g363 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g256 - - vvi:100249082 911.368