Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g257 ATGACTGTTTCTCCGGTTCCTTCGCCCAAGGGTCGTGTCCTCATTGCCGGAGCAACCGGTTTCATTGGTCAGTTCGTGGCCGCAGCAAGCCTGGATGCCCATCGACCCACCTATATTCTCGCACGTCCAGGCCCCAGAAGTCCTTCTAAGGCCAACATCTTCAAGGCCCTCGAGGACAAAGGCGCCATCATCGTATACGGGTTGATAAACGAGCAGGAGGCTATGGAGAAGATACTAAAAGAACATGAGATAGACATAGTAGTATCAACCGTGGGCGGAGAGAGCATATTGGATCAAATCGCCCTAGTGAAAGCCATGAAGGCTGTTGGAACCATTAAGAGATTTTTGCCGTCTGAATTCGGGCACGATGTGAACAGAGCTGATCCAGTTGAGCCAGGGCTCAACATGTACAGAGAGAAGCGTAGGGTCCGACAATTAGTGGAGGAATCGGGCATACCCTTCACTTACATCTGCTGCAACTCAATTGCTTCTTGGCCATACTACAATAACATTCACCCTTCTGAGGTTCTTCCTCCAACGGATTTCTTCCAGATTTACGGTGATGGCAATGTCAAAGCTTACTTTGTTGCAGGCACAGACATCGGAAAATTCACGATGAAAACAGTGGACGATGTCCGAACACTGAACAAATCAGTGCATTTCCGGCCATCTTGCAATTGTCTCAATATAAATGAACTCGCATCTGTGTGGGAAAAGAAGATTGGGAGGACACTTCCCAGAGTAACCGTCACTGAAGATGATCTACTAGCTGCAGCCGGAGAAAACATCATCCCACAGAGTGTGGTAGCGGCGTTCACGCACGACATTTTCATAAAGGGGTGTCAGGTGAATTTCTCTATTGATGGCCCGGAGGACGTGGAAGTGACCACCCTCTACCCTGAGGATTCTTTCAGGACGGTGGAGGAATGCTTCGGCGAATACATTGTGAAGATAGAGGAAAAGCAGCCGACCGCCGATTCTGCTATTGCCAACACCGGTCCTGTGGTTGGGATGCGGCAAGTCACTGCAACCTGCGCTTGA 1041 49.66 MTVSPVPSPKGRVLIAGATGFIGQFVAAASLDAHRPTYILARPGPRSPSKANIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPSEFGHDVNRADPVEPGLNMYREKRRVRQLVEESGIPFTYICCNSIASWPYYNNIHPSEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQVNFSIDGPEDVEVTTLYPEDSFRTVEECFGEYIVKIEEKQPTADSAIANTGPVVGMRQVTATCA* 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2632789 2636084 - Vvi1g257 Vvi1g257 769457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g257 346 Gene3D - 161 311 - -
Vvi1g257 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 259 IPR036291 -
Vvi1g257 346 Gene3D - 12 301 - -
Vvi1g257 346 Pfam NmrA-like family 13 244 IPR008030 -
Vvi1g257 346 CDD PCBER_SDR_a 12 310 IPR045312 GO:0016491
Vvi1g257 346 PANTHER LEUCANTHOCYANIDIN REDUCTASE 8 323 - -
Vvi1g257 346 PANTHER PINORESINOL REDUCTASE-RELATED 8 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g257 K13081 LAR; leucoanthocyanidin reductase [EC:1.17.1.3] - vvi:100232982 696.427
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g257 Vvi17g362 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g257 Blo01g00484 Blo16g01051 Bda01g02098 . Bpe13g01329 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0473 Cone9ag0486 . . . . . . . . . Bpe02g02287 . Bma06g00771 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015267 1 0 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 2 12