Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g259 ATGAGCAGCAGACCCAGAAACTTCCGTCGCCGTGCCGATGACGATGACAACGACGATACCAACGGCGACGGCCCTCCTTTAATCAAACCTACCTCGAAACCCTCTACAACCACCGCGACCACCGCTGCCGCCGCCAAGCCGAAGAAGCCTCCGAAGCTCCTCAGCTTCGCCGACGACGAAGAAAATGAATCCCCATCTCGTTCCTCCTCTCGCTCCACCCAACCCCCATCTCGCCCCTCCAAGACATCCTCTCGCTTCACCAAACTCTCCTCATCGTCCTCCCACAAAATCACCACCACCAAGGACCGCCTCACCCCCTCCTCCGCCTCTCTCCCCTCCAATGTCCAACCCCAAGCTGGCACCTACACCAAAGAAGCCCTTCGTGAACTCCAAAAGAACACCAGAACCCTAGCCAGCTCTCGTCCCGCTTCCTCCGAACCCAAACCCTCACTCGAACCGGTCATCGTCTTGAAAGGCCTTGTCAAACCCATCTCGGCTGCCGAGGATGCCGTGATCGACGAAGAAAATGAGGATACCGAAACCCGATTAGCTTCGATGGGAATTGGGAAGGGTAGGGATTCGATTCCCGATCAAGCTACAATCAACGCTATTCGAGCCAAGAGGGAGCGGCTCCGGCAGTCACGGGCGGCCGCCCCAGATTATATCTCATTGGACGGAGGGAGTAATCATGGGGCGGCGGAGGGGTTGAGCGATGAGGAGCCGGAGTTTCAGGGGCGAATTGCGATGTTTGGGGAGAAGCCTGAGAGTGGGAAAAAGGGCGTCTTTGAGGACGTGGACGAGAGGGGAATGGAAGGGGGGTTTAAGAAGGATGCACATGATAGTGATGACGAGGAAGAGGAGAAAATTTGGGAAGAAGAGCAATTCAGGAAGGGGTTGGGGAAGAGGATGGATGATGGGTCTAGTAGGGTGGTGAGTAGTAGTGTGCCTGTGGTTCAGAAAGTTCAGCAACAAAAGTTCATGTATTCTTCTGTAACTGCATATACCTCAGTGCCAGGTGTATCTGCTCCTTTAAACATAGGGGGTGCGGTTGGGCCACTGCCTGGTTTTGATGCAATGTCGTTATCTCAGCAGGCTGAGCTTGCTAAGAAAGCGTTGCATGAGAACTTGAGGAGGCTTAAGGAGTCTCATGGCAGAACCATGTCATCACTGACTAGAACTGATGAAAATTTGTCTTCCTCACTGTCGAATATCACTACTCTTGAGAAGTCTCTTACTGCTGCCGGTGAGAAGTTCATCTTTATGCAAATTGCTTCGTGA 1278 53.29 MSSRPRNFRRRADDDDNDDTNGDGPPLIKPTSKPSTTTATTAAAAKPKKPPKLLSFADDEENESPSRSSSRSTQPPSRPSKTSSRFTKLSSSSSHKITTTKDRLTPSSASLPSNVQPQAGTYTKEALRELQKNTRTLASSRPASSEPKPSLEPVIVLKGLVKPISAAEDAVIDEENEDTETRLASMGIGKGRDSIPDQATINAIRAKRERLRQSRAAAPDYISLDGGSNHGAAEGLSDEEPEFQGRIAMFGEKPESGKKGVFEDVDERGMEGGFKKDAHDSDDEEEEKIWEEEQFRKGLGKRMDDGSSRVVSSSVPVVQKVQQQKFMYSSVTAYTSVPGVSAPLNIGGAVGPLPGFDAMSLSQQAELAKKALHENLRRLKESHGRTMSSLTRTDENLSSSLSNITTLEKSLTAAGEKFIFMQIAS* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2666171 2676092 - Vvi1g259 Vvi1g259 769459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g259 425 PANTHER GC-RICH SEQUENCE DNA-BINDING FACTOR 1 422 IPR012890 GO:0000398|GO:0003677|GO:0005634
Vvi1g259 425 MobiDBLite consensus disorder prediction 1 122 - -
Vvi1g259 425 MobiDBLite consensus disorder prediction 132 146 - -
Vvi1g259 425 MobiDBLite consensus disorder prediction 132 151 - -
Vvi1g259 425 MobiDBLite consensus disorder prediction 173 195 - -
Vvi1g259 425 MobiDBLite consensus disorder prediction 1 17 - -
Vvi1g259 425 Pfam Nineteen complex-related protein 2 121 324 - -
Vvi1g259 425 Coils Coil 362 382 - -
Vvi1g259 425 MobiDBLite consensus disorder prediction 210 237 - -
Vvi1g259 425 PANTHER LD29489P 1 422 - -
Vvi1g259 425 MobiDBLite consensus disorder prediction 67 121 - -
Vvi1g259 425 MobiDBLite consensus disorder prediction 52 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g259 K13211 GCFC; GC-rich sequence DNA-binding factor - vvi:100245730 664.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g259 . . . . . . . . . . . . . . . Cpe09g00273 . . . . . . . . . . . . . . . . . . . . Csa05g02578 Chy10g01114 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069221 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1