Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g26 ATGGGTCTGCAAGTGACTTTTACTAGAATTTTTCTGTTGATAATCTTGTTTGTTTGGGTCAGAGATGCTCAAGGTCAACTGAAGGTCTTCAATGTGATGAACTATGGTGCAATTGCAAATGGACATTATGACAACAGCGAGGCATTGGGGAGAGCATGGAATGAGGCGTGCCATTGGAAAGGAACCGGTGTAGTACTGATTCCAAGGGGAACCTACATGGTGCACCCTGTGAAATTCCAGGGTCCATGCAGTGGTCGAACCATGTTCCTGAACACAGGAGAGGTGTTGGCTCCTACTGACCCAGCTTTAATCCACGCTGATAATTGGATTGCCTTTCAAGAAATTGATGGGTTGAGGGTCAGTGGAGGCGGGTCATTTAATGGCCAGGGAGAGAAGGTTTGGCACAATAACGTTTGCCATAAGAACTACAACTGCAAACCCCTTTCCTCATCATTGTCTTTCAAATTTGTCACAAATGGCAGGATTGATCACATAACATCAATCAACAGCAAGATGTTCCATTTCAATATATATGATAACCAGAAGATAAGCATCAACCACGTTAAAATATTGGCCCCTGCTGAGAGCCCCAACACTGATGGAATCCATATTGGAAGATCAAACGACATCAGAATTACAAATTCAGAGATACGAACCGGAGATGACTGCATATCCTTGAAACAAGGCAGTAGAGACATCCACATTCAAAACGTTCAATGTGGGCCTGGCCATGGAATTAGTGTTGGAAGTCTAGGCAAGGACGAGGGGGAAGAAGAAGTCAGGGGAATAACAGTAAGAAACTGCACCTTTCAGGGCAGCGATAACGGTCTGAGAATCAAAACTTGGGCGGCCTCTACCAGAAACATTGCATCAGACTTCACATTTGAAGACATTGTCGTCGAAAATGTCCGAAACCCCATCAACATCGATCAAGAGTACTGTCCCCACCCTCCTTGCAATGAGGGTGAATCACAAGTTGAAATCAAAAATGTGAAATTCAGAAACATCCGGGGCACTTCAAGTACAAAAGTTGCAGTGAGCCTCATCTGCAGCAGTAGAATTCCATGTTCCGACATCGAGCTCCATAACATCGACTTAGTGTACCATGACCAGGGAGGACCTGCAACTTCAAGCTGTCGACATGTCAATGGTGTTTCTTCTGGGGTACAAAGACCTCCCAGCTGCATATAG 1191 44.92 MGLQVTFTRIFLLIILFVWVRDAQGQLKVFNVMNYGAIANGHYDNSEALGRAWNEACHWKGTGVVLIPRGTYMVHPVKFQGPCSGRTMFLNTGEVLAPTDPALIHADNWIAFQEIDGLRVSGGGSFNGQGEKVWHNNVCHKNYNCKPLSSSLSFKFVTNGRIDHITSINSKMFHFNIYDNQKISINHVKILAPAESPNTDGIHIGRSNDIRITNSEIRTGDDCISLKQGSRDIHIQNVQCGPGHGISVGSLGKDEGEEEVRGITVRNCTFQGSDNGLRIKTWAASTRNIASDFTFEDIVVENVRNPINIDQEYCPHPPCNEGESQVEIKNVKFRNIRGTSSTKVAVSLICSSRIPCSDIELHNIDLVYHDQGGPATSSCRHVNGVSSGVQRPPSCI* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 376806 378298 + Vvi1g26 Vvi1g26 769226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g26 396 PANTHER - 29 382 - -
Vvi1g26 396 SUPERFAMILY Pectin lyase-like 15 396 IPR011050 -
Vvi1g26 396 Pfam Glycosyl hydrolases family 28 64 383 IPR000743 GO:0004650|GO:0005975
Vvi1g26 396 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 29 382 - -
Vvi1g26 396 ProSitePatterns Polygalacturonase active site. 237 250 IPR000743 GO:0004650|GO:0005975
Vvi1g26 396 Gene3D - 20 394 IPR012334 -
Vvi1g26 396 SMART pbh1 230 250 IPR006626 -
Vvi1g26 396 SMART pbh1 290 311 IPR006626 -
Vvi1g26 396 SMART pbh1 260 281 IPR006626 -
Vvi1g26 396 SMART pbh1 207 228 IPR006626 -
Vvi1g26 396 SMART pbh1 180 206 IPR006626 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g26 K01213 E3.2.1.67; galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67] - vvi:100254136 825.854
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g26 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0038 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000025 5 7 3 7 6 17 1 13 16 19 21 18 22 24 11 26 14 13 2 16 14 8 2 7 10 18 15 17 9 14 375