Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g26 ATGGGTCTGCAAGTGACTTTTACTAGAATTTTTCTGTTGATAATCTTGTTTGTTTGGGTCAGAGATGCTCAAGGTCAACTGAAGGTCTTCAATGTGATGAACTATGGTGCAATTGCAAATGGACATTATGACAACAGCGAGGCATTGGGGAGAGCATGGAATGAGGCGTGCCATTGGAAAGGAACCGGTGTAGTACTGATTCCAAGGGGAACCTACATGGTGCACCCTGTGAAATTCCAGGGTCCATGCAGTGGTCGAACCATGTTCCTGAACACAGGAGAGGTGTTGGCTCCTACTGACCCAGCTTTAATCCACGCTGATAATTGGATTGCCTTTCAAGAAATTGATGGGTTGAGGGTCAGTGGAGGCGGGTCATTTAATGGCCAGGGAGAGAAGGTTTGGCACAATAACGTTTGCCATAAGAACTACAACTGCAAACCCCTTTCCTCATCATTGTCTTTCAAATTTGTCACAAATGGCAGGATTGATCACATAACATCAATCAACAGCAAGATGTTCCATTTCAATATATATGATAACCAGAAGATAAGCATCAACCACGTTAAAATATTGGCCCCTGCTGAGAGCCCCAACACTGATGGAATCCATATTGGAAGATCAAACGACATCAGAATTACAAATTCAGAGATACGAACCGGAGATGACTGCATATCCTTGAAACAAGGCAGTAGAGACATCCACATTCAAAACGTTCAATGTGGGCCTGGCCATGGAATTAGTGTTGGAAGTCTAGGCAAGGACGAGGGGGAAGAAGAAGTCAGGGGAATAACAGTAAGAAACTGCACCTTTCAGGGCAGCGATAACGGTCTGAGAATCAAAACTTGGGCGGCCTCTACCAGAAACATTGCATCAGACTTCACATTTGAAGACATTGTCGTCGAAAATGTCCGAAACCCCATCAACATCGATCAAGAGTACTGTCCCCACCCTCCTTGCAATGAGGGTGAATCACAAGTTGAAATCAAAAATGTGAAATTCAGAAACATCCGGGGCACTTCAAGTACAAAAGTTGCAGTGAGCCTCATCTGCAGCAGTAGAATTCCATGTTCCGACATCGAGCTCCATAACATCGACTTAGTGTACCATGACCAGGGAGGACCTGCAACTTCAAGCTGTCGACATGTCAATGGTGTTTCTTCTGGGGTACAAAGACCTCCCAGCTGCATATAG 1191 44.92 MGLQVTFTRIFLLIILFVWVRDAQGQLKVFNVMNYGAIANGHYDNSEALGRAWNEACHWKGTGVVLIPRGTYMVHPVKFQGPCSGRTMFLNTGEVLAPTDPALIHADNWIAFQEIDGLRVSGGGSFNGQGEKVWHNNVCHKNYNCKPLSSSLSFKFVTNGRIDHITSINSKMFHFNIYDNQKISINHVKILAPAESPNTDGIHIGRSNDIRITNSEIRTGDDCISLKQGSRDIHIQNVQCGPGHGISVGSLGKDEGEEEVRGITVRNCTFQGSDNGLRIKTWAASTRNIASDFTFEDIVVENVRNPINIDQEYCPHPPCNEGESQVEIKNVKFRNIRGTSSTKVAVSLICSSRIPCSDIELHNIDLVYHDQGGPATSSCRHVNGVSSGVQRPPSCI* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 376806 378298 + Vvi1g26 Vvi1g26 769226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g26 396 PANTHER - 29 382 - -
Vvi1g26 396 SUPERFAMILY Pectin lyase-like 15 396 IPR011050 -
Vvi1g26 396 Pfam Glycosyl hydrolases family 28 64 383 IPR000743 GO:0004650|GO:0005975
Vvi1g26 396 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 29 382 - -
Vvi1g26 396 ProSitePatterns Polygalacturonase active site. 237 250 IPR000743 GO:0004650|GO:0005975
Vvi1g26 396 Gene3D - 20 394 IPR012334 -
Vvi1g26 396 SMART pbh1 230 250 IPR006626 -
Vvi1g26 396 SMART pbh1 290 311 IPR006626 -
Vvi1g26 396 SMART pbh1 260 281 IPR006626 -
Vvi1g26 396 SMART pbh1 207 228 IPR006626 -
Vvi1g26 396 SMART pbh1 180 206 IPR006626 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g26 K01213 - vvi:100254136 825.854