Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g261 ATGGAGTGCGGCGATATCATATACCGGAGTACGCTACCCCGATCAAACGGTCTCACACTCACGGCTCCCGGCGCTATTTTGGCGCTGGGTGCTCTGTCTTACCTGTGGGCTACACCTGGTGTGGCTCCTGGGTTCTTTGATATGTTTGTTCTTGCTTTTGTTGAGAGATTGTTTAGGCCATCTTTTAAGAAGGAGGATTTTGTGCTGGGGAAGAAGTTGGGGGAGGGAGCTTTCGGTGTGGTTTATAGGGTTTCATTAGCAAAGAAACCAGGGGCAAAGGAAGGTGACTTAGTCTTGAAAAAGGCTACTGAATATGGTGCCGTGGAGATTTGGATGAATGAGCGTGCACGAAGGGCTTGCGCAAATAGCTGTGCCTACTTTGTCTATGGCTTTCTTGAGAGTTCTTCAAAGAAAGGAAGTGAATACTGGCTTCTATGGCGGTATGAAGGGGAGTCCACACTTACAGATCTGATGCTGAGTAAAGAGTTTCCATACAACGTGGAAAGTATGATTCTTGGAGAGGTTCCAGACTTGCCTAAGGGGCTGGAAAGGGAAAACAAAATCATTCAGACAATCATGAGGCAGCTTTTATTTGCATTGGATAGTCTTCACTCAACTGGGATTGTTCATAGAGATATTAAGCCACAAAATATTATTTTTTCTGAAGGGTCTCGCACATTCAAGATCATTGATCTTGGAGCTGCAGCAGATTTGAGAGTAGGGATCAATTATATTCCAAAGGAGTTTCTTTTGGACCCCAGATATGCAGCACCAGAGCAATACATCATGAGCACACAAACTCCTTCTGCACCCTCAGCTCCAGTGGCAACTGCACTTTCCCCAGTCCTATGGCAGATGAATTTGCCAGATAGATTTGACATCTACAGTGCTGGTCTCATTTTCCTACAAATGGCATTCCCATCATTGAGGACTGATAGTAGCCTCATACAATTCAACCGCCAACTCAAGAGGTGTGAATATGATTTAGTTGCATGGAGGAAGACTGTGGAGCCTCGTGCTAGCCCTGACCTGCGGAGGGGCTTTGAGTTGTTGGATTTAGATGGTGGAATAGGATGGGAACTTCTAACGTCAATGGTTCGTTTCAAAGCACGACGAAGAACCAGTGCAAAAGCAGCCTTAGCTCATCCCTACTTTGATAGGGAAGGCTTATCAGTGCTGTCCCTCACACAGAAGCTAAGGCTGCAACTCTTTCGAACTACACAACAGGATTATGGGGAAGCTGCCAAATGGATTATTCGGCTAATGGCAAAATCAGGAACAAAGCAGGACGGTGGCTTCACTGAAGCTCAACTTCAGGAACTCAGAGAAATACAGCCTAAGAAGAAGGGAAATTCGCAAAGGAATGCTCTTGCTTCCGTTCTTCGGCTGCAGAGGAAGATAGTAAGAACACTGAATGAGAGCATGGATGACCTTAACCGACGCAGGAAGAGCCTTTGGTGGAGCAGGTGGATCCCCAGAGAAGAATGA 1488 46.17 MECGDIIYRSTLPRSNGLTLTAPGAILALGALSYLWATPGVAPGFFDMFVLAFVERLFRPSFKKEDFVLGKKLGEGAFGVVYRVSLAKKPGAKEGDLVLKKATEYGAVEIWMNERARRACANSCAYFVYGFLESSSKKGSEYWLLWRYEGESTLTDLMLSKEFPYNVESMILGEVPDLPKGLERENKIIQTIMRQLLFALDSLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQMNLPDRFDIYSAGLIFLQMAFPSLRTDSSLIQFNRQLKRCEYDLVAWRKTVEPRASPDLRRGFELLDLDGGIGWELLTSMVRFKARRRTSAKAALAHPYFDREGLSVLSLTQKLRLQLFRTTQQDYGEAAKWIIRLMAKSGTKQDGGFTEAQLQELREIQPKKKGNSQRNALASVLRLQRKIVRTLNESMDDLNRRRKSLWWSRWIPREE* 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2692099 2698939 - Vvi1g261 Vvi1g261 769461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g261 495 ProSiteProfiles Protein kinase domain profile. 67 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g261 495 ProSitePatterns Protein kinases ATP-binding region signature. 73 100 IPR017441 GO:0005524
Vvi1g261 495 Pfam Protein kinase domain 69 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g261 495 Gene3D Phosphorylase Kinase; domain 1 53 147 - -
Vvi1g261 495 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 1 495 - -
Vvi1g261 495 CDD STKc_SNT7_plant 71 385 - -
Vvi1g261 495 Gene3D Transferase(Phosphotransferase) domain 1 179 390 - -
Vvi1g261 495 SMART serkin_6 67 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g261 495 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 495 IPR044803 GO:0004674|GO:0009579
Vvi1g261 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vvi1g261 495 SUPERFAMILY Protein kinase-like (PK-like) 53 387 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g261 - - - vvi:100255959 969.918
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g261 Blo01g00485 Blo16g01053 Bda01g02095 . . . . . . . . . . . . . Cpe01g01762 . . . . . . . . . . . . . . Cone13ag0856 Cone19ag0856 . . . . . . . . . . . Bpe02g02285 Bma01g00154 . . . . Cma04g02007 . . . . . Bhi12g01376 . . . . . . . . . . . . . . Csa05g01509 . Cme09g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010559 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76498 PF00069 Pkinase 1.70E-21 CL0016 Vvi PK