Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g266 ATGGACGGAAGTTGCATAGATGAGAGTACTACTAGTGATTCTATTTCAACGTCGCTGCCCGCTTTATCTGCTCTGCCGGCAACCAAGTCGCCGGAGAGTTTGTGCAGAGTTGGGAGTGGGACGAGTGTGATACTGGACTCCGAGAGCAGAAGAAGCTGCCAAGGCTTACGACATCGCGGCGCAGAGGTTCCGTGGCCGCGACGCGCGAAACTACGGGTTGGACGCGAATGGGAAGAGGAGCCGAGCCGAAGGCCTCATGACTCCATTCGGACTGGAACCACATCCAAAGGGGTGCTTCTGAATTTCGAAGACATGGGCGGGAAAGTATGGAGGTTTCGATACTCGTACTGGAACAGCAGCCAGAGCTACGTTCTGACCAAAGGGTGGAGCCGGTTCGTGAAGGAGAAGAACCTTAAGGCGGGAGACATTGTGAGTTTCCAGAGATCGACGGGAGGGGACAAGCAGCTGTACATAGACTGGAAGGCCAGAAACGGCCCGACGAATCAGATCAATCCGGTAGAGCCGGTGGAGATGGTGAGGTTATTCGGAGTCAACATTTTCAAAGTACCCGTAAATAGCAGTGTGGTTGTGGCTAACAATGGTAGTTGGACTGGTAAGAGAATGATAGAAATGGAGCTCCTGTCCTTCGAATGTAGTAAAAAACAGAGGGTAATCGGAGCTGTGTAA 687 52.26 MDGSCIDESTTSDSISTSLPALSALPATKSPESLCRVGSGTSVILDSESRRSCQGLRHRGAEVPWPRRAKLRVGREWEEEPSRRPHDSIRTGTTSKGVLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGGDKQLYIDWKARNGPTNQINPVEPVEMVRLFGVNIFKVPVNSSVVVANNGSWTGKRMIEMELLSFECSKKQRVIGAV* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2751619 2752908 + Vvi1g266 Vvi1g266 769466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g266 228 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 49 IPR044800 GO:0003700
Vvi1g266 228 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 93 228 IPR044800 GO:0003700
Vvi1g266 228 Pfam B3 DNA binding domain 93 162 IPR003340 GO:0003677
Vvi1g266 228 MobiDBLite consensus disorder prediction 1 20 - -
Vvi1g266 228 Gene3D - 69 171 IPR015300 -
Vvi1g266 228 SUPERFAMILY DNA-binding pseudobarrel domain 93 162 IPR015300 -
Vvi1g266 228 ProSiteProfiles B3 DNA-binding domain profile. 100 164 IPR003340 GO:0003677
Vvi1g266 228 CDD B3_DNA 102 149 IPR003340 GO:0003677
Vvi1g266 228 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 93 228 - -
Vvi1g266 228 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 1 49 - -
Vvi1g266 228 SMART B3_2 82 164 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g266 Vvi14g918 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14493 PF02362 B3 1.80E-19 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g266 K09287 - vvi:100262843 280.026