Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g267 ATGGGATTCGGTACTTCGCTATCTCATGCGCGACCACTGCAACTCTCTTCATCTCTTTATGGCGAGGCCTTGTCATCTTCCTCCTCATCCAGCCTCTTTATGGGGGGTCCATTCGCCGCCTCCGTGCCCTTTACCCTCACTGGGAACAAATTACATTTTCGAAAGCTCGTTGTTGTCTCCAAAAGGATATCGGGCTTGGAGGAAGCCATGAGAATTCAGAGACAAAAAGAGCTTCGAGAAAAAAGAACCTTTAGAAGAAGGATACCATTAAGGCGTGGAAGGGTATCACCCCGTCTTCCTGTGCCTGACCACATACCAAAGCCTCCTTATCTAAGTTCAACTTCATTGCCCGAACTATCAAGTGAACATCAAATTCATGACTCTGAAGGCATCAGTCGCATGAAAGCTGCATGTGAGCTAGCTGCCCGTGTCTTAGACTATGCAGGAACGTTGGTTAGGCCATCAGTAACAACAAATGAAATTGACAAAGCAGTGCATCAGATGATAATTGAGGCTGGTGCTTATCCTTCACCTCTTGGCTATGGAGGATTTCCAAAGAGTGTGTGCACTTCAGTTAATGAGTGCATGTGCCATGGGATTCCTGATTCTCGCCAGCTACAGGATGGTGACATAATAAACATTGATGTAACAGTCTACTTTAATGGTTATCATGGAGACACATCAAAGACTTTTCTTTGTGGCAATGTTACTGATGGACTCAAACGCCTTGTGAGGGTAACTGAAGAGTGTATGGAAAGAGGCATAGCTTGTTGCAAAGATGGTGCTAGTTTTAAGAAAATTGGAAAGAGAATTAGTGAGCATGCTGAAAAATTTGGTTTCGGTGTGGTGGAGCGCTTTGTGGGGCATGGTGTGGGGACCGTATTTCATTCTGAACCAGTTATATTGCATCATCGCAACGACAAGTCGGGTCACATGGTTGAAGGTCAAACATTTACTATTGAGCCAATTCTTACAATTGGAAGCACAGAATGCATAACATGGTCTGACAACTGGACAACTGTGACAGCAGATGGATTCCCTGCTGCACAGTTTGAGCATACCATTTTGATTACTAGAACTGGTGCAGAAGTTTTAACAAAGTACTGA 1107 44.35 MGFGTSLSHARPLQLSSSLYGEALSSSSSSSLFMGGPFAASVPFTLTGNKLHFRKLVVVSKRISGLEEAMRIQRQKELREKRTFRRRIPLRRGRVSPRLPVPDHIPKPPYLSSTSLPELSSEHQIHDSEGISRMKAACELAARVLDYAGTLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYFNGYHGDTSKTFLCGNVTDGLKRLVRVTEECMERGIACCKDGASFKKIGKRISEHAEKFGFGVVERFVGHGVGTVFHSEPVILHHRNDKSGHMVEGQTFTIEPILTIGSTECITWSDNWTTVTADGFPAAQFEHTILITRTGAEVLTKY* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2754309 2765820 + Vvi1g267 Vvi1g267 769467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g267 368 CDD MetAP1 131 367 IPR002467 GO:0006508|GO:0070006
Vvi1g267 368 SUPERFAMILY Creatinase/aminopeptidase 84 367 IPR036005 -
Vvi1g267 368 PANTHER METHIONINE AMINOPEPTIDASE 30 367 - -
Vvi1g267 368 Gene3D Creatinase/methionine aminopeptidase superfamily 88 368 IPR036005 -
Vvi1g267 368 Hamap Methionine aminopeptidase [map]. 123 368 IPR002467 GO:0006508|GO:0070006
Vvi1g267 368 ProSitePatterns Methionine aminopeptidase subfamily 1 signature. 286 304 IPR002467 GO:0006508|GO:0070006
Vvi1g267 368 TIGRFAM met_pdase_I: methionine aminopeptidase, type I 125 367 IPR002467 GO:0006508|GO:0070006
Vvi1g267 368 PANTHER METHIONINE AMINOPEPTIDASE 30 367 - -
Vvi1g267 368 Pfam Metallopeptidase family M24 133 358 IPR000994 -
Vvi1g267 368 PRINTS Methionine aminopeptidase-1 signature 188 201 IPR001714 -
Vvi1g267 368 PRINTS Methionine aminopeptidase-1 signature 210 226 IPR001714 -
Vvi1g267 368 PRINTS Methionine aminopeptidase-1 signature 280 292 IPR001714 -
Vvi1g267 368 PRINTS Methionine aminopeptidase-1 signature 310 322 IPR001714 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g267 K01265 map; methionyl aminopeptidase [EC:3.4.11.18] - vvi:100262904 708.753
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g267 . . . . . . Bma14g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0467 Cone9ag0479 . . . . . Blo11g00831 . . Bpe11g01691 . . . . . . . . . . . . Bhi12g01373 . . . . . Lcy10g0912 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002340 1 1 2 1 1 2 0 2 2 2 2 2 2 2 2 2 2 3 2 2 2 3 3 2 3 2 1 5 1 2 59