Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g269 ATGCAGACTCCGTCTTTCGCCTGCATATCCTCCAGTGAGAGTGCCTGTTTAGAAGCTGATGAAGAAGATGAGGATTCCATACTTCTTTCACTTTGCCCTCCTGGACAGAGCACCTCCAAACGTGCCATCTATCATCCATCCTCAAGCAAGCCACAGAATTATCAAAACACTAATAGGGAAGATGGTGTAACGGTAGCTCTTCACATCGGTCCTCCAAATGCCTGTGCCAGCACAAGCAACCCTAATAACATTAATGGTGGTGATCCCGTTGAAGGACAGTACTGGATTCCCTCGCCGGCACAAATCCTTGTAGGCCCAACACAGTTCTCTTGCACTGTCTGCAACAAAACATTCAATCGATACAACAACATGCAGATGCATATGTGGGGTCATGGATCACAATACAGAAAGGGCCCGGAGTCGTTAAGAGGGACAAAGCCAGCTTCATCCATTCTTAGGTTGCCATGTTACTGTTGCGCTCAGGGCTGTAAGAACAATATAGAGCACCCAAGATCAAAACCACTGAAGGATTTCAGAACTCTGCAGACACATTACAAGCGGAAGCATGGAGCGAAGCCTTTTTCTTGCCGGAAATGCGGGAAAGCTTTTGCAGTGAGGGGGGATTGGAGGACTCATGAGAAGAACTGTGGGAAGCTTTGGTTTTGTATCTGTGGGTCAGATTTTAAGCACAAGAGGTCTCTTAAGGACCATGTTCGCGCCTTTGGAGATGGACATGCTCCGCACAGTGTGGAGATGTATGGTGTTGAGGAAGAAGATGATAACGATGATGACCATGGAAATGGAGGCCATGGTTCCGTACTATGTTAA 828 47.22 MQTPSFACISSSESACLEADEEDEDSILLSLCPPGQSTSKRAIYHPSSSKPQNYQNTNREDGVTVALHIGPPNACASTSNPNNINGGDPVEGQYWIPSPAQILVGPTQFSCTVCNKTFNRYNNMQMHMWGHGSQYRKGPESLRGTKPASSILRLPCYCCAQGCKNNIEHPRSKPLKDFRTLQTHYKRKHGAKPFSCRKCGKAFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHSVEMYGVEEEDDNDDDHGNGGHGSVLC* 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2770672 2771827 - Vvi1g269 Vvi1g269 769469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g269 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 214 IPR013087 -
Vvi1g269 275 SUPERFAMILY beta-beta-alpha zinc fingers 179 214 IPR036236 -
Vvi1g269 275 MobiDBLite consensus disorder prediction 36 57 - -
Vvi1g269 275 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Vvi1g269 275 SMART c2h2final6 109 131 IPR013087 -
Vvi1g269 275 SMART c2h2final6 157 189 IPR013087 -
Vvi1g269 275 SMART c2h2final6 194 214 IPR013087 -
Vvi1g269 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Vvi1g269 275 PANTHER ZINC FINGER PROTEIN WIP6 4 264 - -
Vvi1g269 275 Gene3D Classic Zinc Finger 190 250 - -
Vvi1g269 275 PANTHER ZINC FINGER PROTEIN WIP2 4 264 IPR043584 GO:0003700|GO:0010468
Vvi1g269 275 Pfam Zinc finger, C2H2 type 109 128 IPR013087 -
Vvi1g269 275 SUPERFAMILY beta-beta-alpha zinc fingers 105 130 IPR036236 -
Vvi1g269 275 Gene3D Classic Zinc Finger 108 131 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14494 PF13912 zf-C2H2_6 0.00013 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g269 - - vvi:100252639 583.563